Scaffold Ga0257107_1031941

Overview

Basic Information

• Taxon OID: 3300028192
• Scaffold ID: Ga0257107_1031941
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1663
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F038414	Metagenome	166	Y
F072760	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257107_10319411	F072760	GAG	MSMEKHTLRAVKITQNIFELNRVNTELQHLKICVKVLENKKIELEDSF
Ga0257107_10319412	F000615	AGTAG	MRKDSHSFNPKRENIMCRIRCFYECSDGTMGWAEMVLPYEEDIAGFVKFWGTGGRMVITEHIDLV
Ga0257107_10319415	F038414	GAG	MTREEQRNNTINEFYKKRTSPKTLQIQASKTARSKAEWLHISTSEIDGEGRGTYDVGSRAMKRDRLADKKLRAKQANLR