NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F072760

Metagenome Family F072760

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F072760
Family Type Metagenome
Number of Sequences 121
Average Sequence Length 46 residues
Representative Sequence MSMELHTLRAVKITQNIFELNRVNTELQHLKICVKVLENRKIELEDSF
Number of Associated Samples 67
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 43.80 %
% of genes near scaffold ends (potentially truncated) 28.10 %
% of genes from short scaffolds (< 2000 bps) 69.42 %
Associated GOLD sequencing projects 56
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (82.645 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(53.719 % of family members)
Environment Ontology (ENVO) Unclassified
(95.868 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(77.686 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 68.75%    β-sheet: 0.00%    Coil/Unstructured: 31.25%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF08406CbbQ_C 4.96
PF01555N6_N4_Mtase 4.13
PF02617ClpS 4.13
PF13692Glyco_trans_1_4 2.48
PF136402OG-FeII_Oxy_3 2.48
PF04545Sigma70_r4 1.65
PF02086MethyltransfD12 1.65
PF12705PDDEXK_1 1.65
PF137592OG-FeII_Oxy_5 0.83
PF01844HNH 0.83
PF03013Pyr_excise 0.83
PF01370Epimerase 0.83
PF13884Peptidase_S74 0.83
PF07728AAA_5 0.83
PF09293RNaseH_C 0.83
PF07486Hydrolase_2 0.83
PF00004AAA 0.83
PF02511Thy1 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 121 Family Scaffolds
COG0714MoxR-like ATPaseGeneral function prediction only [R] 4.96
COG0863DNA modification methylaseReplication, recombination and repair [L] 4.13
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 4.13
COG2127ATP-dependent Clp protease adapter protein ClpSPosttranslational modification, protein turnover, chaperones [O] 4.13
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 4.13
COG0338DNA-adenine methylaseReplication, recombination and repair [L] 1.65
COG3392Adenine-specific DNA methylaseReplication, recombination and repair [L] 1.65
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 0.83
COG3773Cell wall hydrolase CwlJ, involved in spore germinationCell cycle control, cell division, chromosome partitioning [D] 0.83


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A82.64 %
All OrganismsrootAll Organisms17.36 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000173|LPfeb10P16500mDRAFT_c1016594Not Available673Open in IMG/M
3300000179|LPjun09P16500mDRAFT_c1028790Not Available798Open in IMG/M
3300000222|LPjun09P12500mDRAFT_1017990All Organisms → Viruses → Predicted Viral1437Open in IMG/M
3300000251|LPjun08P16500mDRAFT_1033997Not Available547Open in IMG/M
3300001683|GBIDBA_10054881Not Available1465Open in IMG/M
3300003495|JGI26244J51143_1002020Not Available6491Open in IMG/M
3300003619|JGI26380J51729_10057158Not Available970Open in IMG/M
3300005838|Ga0008649_10182313Not Available823Open in IMG/M
3300005969|Ga0066369_10163547Not Available737Open in IMG/M
3300006164|Ga0075441_10058964Not Available1510Open in IMG/M
3300006165|Ga0075443_10020825Not Available2202Open in IMG/M
3300006190|Ga0075446_10054995Not Available1223Open in IMG/M
3300006324|Ga0068476_1340372Not Available998Open in IMG/M
3300009173|Ga0114996_10087063Not Available2686Open in IMG/M
3300009173|Ga0114996_10133966All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon2057Open in IMG/M
3300009173|Ga0114996_10138691Not Available2014Open in IMG/M
3300009173|Ga0114996_10183175Not Available1701Open in IMG/M
3300009173|Ga0114996_10306788All Organisms → Viruses → Predicted Viral1240Open in IMG/M
3300009173|Ga0114996_10499112Not Available918Open in IMG/M
3300009173|Ga0114996_10986345Not Available599Open in IMG/M
3300009173|Ga0114996_11093101Not Available562Open in IMG/M
3300009409|Ga0114993_10077709Not Available2624Open in IMG/M
3300009409|Ga0114993_10451370Not Available960Open in IMG/M
3300009409|Ga0114993_10520843All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300009420|Ga0114994_10002720Not Available12946Open in IMG/M
3300009420|Ga0114994_10006618Not Available8384Open in IMG/M
3300009420|Ga0114994_10016244Not Available5255Open in IMG/M
3300009420|Ga0114994_10029273Not Available3849Open in IMG/M
3300009420|Ga0114994_10100418Not Available1970Open in IMG/M
3300009420|Ga0114994_10238129Not Available1220Open in IMG/M
3300009422|Ga0114998_10258633Not Available820Open in IMG/M
3300009425|Ga0114997_10105983All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1710Open in IMG/M
3300009425|Ga0114997_10479387Not Available664Open in IMG/M
3300009441|Ga0115007_10275864Not Available1089Open in IMG/M
3300009441|Ga0115007_10579557Not Available746Open in IMG/M
3300009512|Ga0115003_10945261Not Available500Open in IMG/M
3300009601|Ga0114914_1061121Not Available592Open in IMG/M
3300009622|Ga0105173_1028747Not Available873Open in IMG/M
3300009705|Ga0115000_10074091Not Available2307Open in IMG/M
3300009705|Ga0115000_10379704Not Available903Open in IMG/M
3300009705|Ga0115000_10601368Not Available685Open in IMG/M
3300009705|Ga0115000_10865294Not Available553Open in IMG/M
3300009706|Ga0115002_10323203Not Available1159Open in IMG/M
3300009706|Ga0115002_10330072All Organisms → Viruses → Predicted Viral1144Open in IMG/M
3300009785|Ga0115001_10886936Not Available536Open in IMG/M
3300009786|Ga0114999_10227558Not Available1533Open in IMG/M
3300009786|Ga0114999_10330780All Organisms → Viruses → Predicted Viral1217Open in IMG/M
3300009786|Ga0114999_10369007All Organisms → Viruses → Predicted Viral1137Open in IMG/M
3300010883|Ga0133547_10069606Not Available8026Open in IMG/M
3300017775|Ga0181432_1025363Not Available1560Open in IMG/M
3300020309|Ga0211681_1046763Not Available726Open in IMG/M
3300020372|Ga0211683_10154897Not Available736Open in IMG/M
3300020376|Ga0211682_10076902Not Available1347Open in IMG/M
3300020382|Ga0211686_10018930Not Available2855Open in IMG/M
3300021087|Ga0206683_10026316Not Available3430Open in IMG/M
(restricted) 3300022888|Ga0233428_1005556Not Available9016Open in IMG/M
(restricted) 3300022902|Ga0233429_1007151Not Available8619Open in IMG/M
(restricted) 3300022902|Ga0233429_1013314Not Available5328Open in IMG/M
(restricted) 3300022902|Ga0233429_1063201Not Available1647Open in IMG/M
(restricted) 3300024255|Ga0233438_10164699Not Available939Open in IMG/M
(restricted) 3300024258|Ga0233440_1030281Not Available2221Open in IMG/M
(restricted) 3300024258|Ga0233440_1100907Not Available920Open in IMG/M
(restricted) 3300024259|Ga0233437_1137082Not Available1138Open in IMG/M
(restricted) 3300024261|Ga0233439_10441697Not Available525Open in IMG/M
3300025138|Ga0209634_1057105All Organisms → Viruses → Predicted Viral1895Open in IMG/M
3300025676|Ga0209657_1025514Not Available2390Open in IMG/M
3300026253|Ga0208879_1328577Not Available547Open in IMG/M
3300027522|Ga0209384_1020543Not Available2103Open in IMG/M
3300027672|Ga0209383_1127799Not Available815Open in IMG/M
3300027687|Ga0209710_1120883Not Available996Open in IMG/M
3300027714|Ga0209815_1070015Not Available1219Open in IMG/M
3300027714|Ga0209815_1208965Not Available600Open in IMG/M
3300027779|Ga0209709_10000914Not Available27708Open in IMG/M
3300027779|Ga0209709_10002521Not Available15870Open in IMG/M
3300027779|Ga0209709_10004134Not Available11812Open in IMG/M
3300027779|Ga0209709_10004541Not Available11143Open in IMG/M
3300027779|Ga0209709_10005738Not Available9697Open in IMG/M
3300027779|Ga0209709_10028053All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium3546Open in IMG/M
3300027779|Ga0209709_10029892All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae3402Open in IMG/M
3300027779|Ga0209709_10059043Not Available2170Open in IMG/M
3300027779|Ga0209709_10079251Not Available1785Open in IMG/M
3300027779|Ga0209709_10273615Not Available735Open in IMG/M
3300027779|Ga0209709_10331064All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote634Open in IMG/M
3300027780|Ga0209502_10149572All Organisms → Viruses → Predicted Viral1124Open in IMG/M
3300027788|Ga0209711_10120077Not Available1300Open in IMG/M
3300027788|Ga0209711_10130217All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1233Open in IMG/M
3300027788|Ga0209711_10302965Not Available690Open in IMG/M
3300027801|Ga0209091_10447067Not Available574Open in IMG/M
3300027801|Ga0209091_10502220Not Available526Open in IMG/M
3300027827|Ga0209035_10138408Not Available1213Open in IMG/M
3300027838|Ga0209089_10006239Not Available9690Open in IMG/M
3300027838|Ga0209089_10031119Not Available3599Open in IMG/M
3300027838|Ga0209089_10305205Not Available906Open in IMG/M
3300027838|Ga0209089_10434633Not Available721Open in IMG/M
3300027838|Ga0209089_10497521All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote659Open in IMG/M
3300027839|Ga0209403_10257790Not Available989Open in IMG/M
3300027839|Ga0209403_10410973Not Available708Open in IMG/M
3300027847|Ga0209402_10404148All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Straboviridae → Mylasvirus → Mylasvirus persius822Open in IMG/M
3300027847|Ga0209402_10513335Not Available696Open in IMG/M
3300028192|Ga0257107_1031941Not Available1663Open in IMG/M
3300028192|Ga0257107_1035041Not Available1580Open in IMG/M
3300028192|Ga0257107_1057381All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1195Open in IMG/M
3300028535|Ga0257111_1029149Not Available1888Open in IMG/M
3300028535|Ga0257111_1227899Not Available546Open in IMG/M
3300031510|Ga0308010_1008572All Organisms → Viruses → Predicted Viral4671Open in IMG/M
3300031510|Ga0308010_1036849Not Available2042Open in IMG/M
3300031510|Ga0308010_1172850Not Available795Open in IMG/M
3300031519|Ga0307488_10411221All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Straboviridae → Mylasvirus → Mylasvirus persius833Open in IMG/M
3300031598|Ga0308019_10337219Not Available553Open in IMG/M
3300031603|Ga0307989_1004929Not Available5016Open in IMG/M
3300031612|Ga0308009_10163914Not Available838Open in IMG/M
3300031629|Ga0307985_10147151Not Available936Open in IMG/M
3300031630|Ga0308004_10018838Not Available3004Open in IMG/M
3300031659|Ga0307986_10022343All Organisms → Viruses → Predicted Viral3609Open in IMG/M
3300031659|Ga0307986_10036622Not Available2666Open in IMG/M
3300031659|Ga0307986_10049650Not Available2199Open in IMG/M
3300031659|Ga0307986_10064992All Organisms → Viruses → Predicted Viral1854Open in IMG/M
3300031696|Ga0307995_1242495Not Available621Open in IMG/M
3300031696|Ga0307995_1282955Not Available557Open in IMG/M
3300031721|Ga0308013_10099123Not Available1144Open in IMG/M
3300034695|Ga0372840_091543Not Available905Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine53.72%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine12.40%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine9.09%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater7.44%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine4.13%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine4.13%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine3.31%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean0.83%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.83%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic0.83%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.83%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.83%
Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume0.83%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater0.83%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000173Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 500mEnvironmentalOpen in IMG/M
3300000179Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 500mEnvironmentalOpen in IMG/M
3300000222Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 500mEnvironmentalOpen in IMG/M
3300000251Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P16 500mEnvironmentalOpen in IMG/M
3300001683Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assemblyEnvironmentalOpen in IMG/M
3300003495Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNAEnvironmentalOpen in IMG/M
3300003619Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNAEnvironmentalOpen in IMG/M
3300005838Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNAEnvironmentalOpen in IMG/M
3300005969Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_AEnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006165Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNAEnvironmentalOpen in IMG/M
3300006190Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNAEnvironmentalOpen in IMG/M
3300006324Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500mEnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009422Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138EnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300009441Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M MetagenomeEnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009601Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38EnvironmentalOpen in IMG/M
3300009622Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300020309Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX556064-ERR599104)EnvironmentalOpen in IMG/M
3300020372Marine microbial communities from Tara Oceans - TARA_B100000787 (ERX556133-ERR599090)EnvironmentalOpen in IMG/M
3300020376Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)EnvironmentalOpen in IMG/M
3300020382Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)EnvironmentalOpen in IMG/M
3300021087Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015EnvironmentalOpen in IMG/M
3300022888 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_120_MGEnvironmentalOpen in IMG/M
3300022902 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_135_MGEnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024258 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_120_MGEnvironmentalOpen in IMG/M
3300024259 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MGEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025676Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026253Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300027522Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027672Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027687Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)EnvironmentalOpen in IMG/M
3300027714Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027780Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027827Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027839Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)EnvironmentalOpen in IMG/M
3300027847Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)EnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300028535Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500mEnvironmentalOpen in IMG/M
3300031510Marine microbial communities from water near the shore, Antarctic Ocean - #129EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031598Marine microbial communities from water near the shore, Antarctic Ocean - #284EnvironmentalOpen in IMG/M
3300031603Marine microbial communities from Ellis Fjord, Antarctic Ocean - #185EnvironmentalOpen in IMG/M
3300031612Marine microbial communities from water near the shore, Antarctic Ocean - #127EnvironmentalOpen in IMG/M
3300031629Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80EnvironmentalOpen in IMG/M
3300031630Marine microbial communities from water near the shore, Antarctic Ocean - #38EnvironmentalOpen in IMG/M
3300031659Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82EnvironmentalOpen in IMG/M
3300031696Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262EnvironmentalOpen in IMG/M
3300031721Marine microbial communities from water near the shore, Antarctic Ocean - #181EnvironmentalOpen in IMG/M
3300034695Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500mEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LPfeb10P16500mDRAFT_101659433300000173MarineMERHTLRAVKITKNIFELNRLNTELQHLKICVKVLENRKIELEDSF*
LPjun09P16500mDRAFT_102879013300000179MarineMELHTLRAVKITKNIFELHRVNTELQHLKICVKVLENRKIELENSF*
LPjun09P12500mDRAFT_101799023300000222MarineMGMELHTLRAVKITKNIFELHRVNTELQHLKICVKVLENRKIELEDSF*
LPjun08P16500mDRAFT_103399723300000251MarineMSMELHTLRAVKITQNIFELNRLNTELQHLKICVKVLENRKTELESSLTH*
GBIDBA_1005488123300001683Hydrothermal Vent PlumeMSMELHTLRAVKITQNIFELNRLNTELQHLKICVKVLENRKTELESSLTQTI*
JGI26244J51143_100202093300003495MarineMSMELHTLRAVKITKNIFELQRVNTELRKFQQVVEVLEIRKSELENSF*
JGI26380J51729_1005715813300003619MarineSMELHTLRAVKITKNIFELQRVNTELRKFQQVVEVLEIRKSELENSF*
Ga0008649_1018231313300005838MarineMSMELHTLRAVKITKNIFELRRVNTELQKFRQVVSVLENRKSELESSI*
Ga0066369_1016354723300005969MarineMELHTLRAVKLTKNIFELQRVNSELRKFQQVVEVLEIRKSELENNMI*
Ga0075441_1005896463300006164MarineMSMELHTLRAVKITKNIFELRRVNTELRKFQQVVEVLEIRKSELENSF*
Ga0075443_1002082563300006165MarineMSMELHTLRAVKITKNIFELQRVNTELRKFQQVVEVLEARKSELENSF*
Ga0075446_1005499533300006190MarineMELHTLRAVKITKNIFELQRVNTELRKFQQVVEVLEARKSELENSF*
Ga0068476_134037223300006324MarineMSMEIHTLRAVKLTQNIFELNRLNTELQHLKVCVKVLENRKAELEASF*
Ga0114996_1008706383300009173MarineMSMEKHTLRAVKITQNIFELNRVNTELQHLKICIKVLENKKIELEDSF*
Ga0114996_1013396673300009173MarineMELHTLRAVKVTKNIFELHRVNTELQHLKICVKVLENRKIELENSF*
Ga0114996_1013869173300009173MarineMEKHTLRAVKITQNIFELNRVNTELQHLKICIKVLENKK
Ga0114996_1018317533300009173MarineMSIELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENKKTELELSLTH*
Ga0114996_1030678853300009173MarineMSMELHTLRAVKITKNIFELQRVNTELQKFRQVVSVLENRKSELESSI*
Ga0114996_1049911213300009173MarineMGMELHTLRAVKITKNIFELRRVNTELQKFRQVVSILENRKSELENNMI*
Ga0114996_1098634523300009173MarineMSMELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENRKTELESSLTH*
Ga0114996_1109310123300009173MarineMGMELHTLRAVKITKNIFELNRLNTELQHLKICVKVLENKKIELEDSF*
Ga0114993_1007770913300009409MarineMSMERHTLRAVKITKNIFELNRLNTELQHLKICVKVLENRKIELEDSF*
Ga0114993_1045137043300009409MarineMGMELHTLRAVKITKNIFELRRVNTELQKFRQVVFILENRKSELENNMI*
Ga0114993_1052084323300009409MarineMELHTLRAVKITKNIFELQRVNTELQKFRQVVSILENRKSELESSI*
Ga0114994_10002720243300009420MarineMSMERHTLRAVKITKNIFELNRLNTELRHLKICVKVLENRKIELEDSF*
Ga0114994_10006618133300009420MarineMSMELHTLRAVKITKNIFELRRINTELRKFQQVVEVLEIRKSELENNIV*
Ga0114994_10016244113300009420MarineMGMELHTLRAVKITKTIFELHRVNTELQHLKICVKVLENKKIELEDSF*
Ga0114994_1002927343300009420MarineMSMERHTLRAVKITQNIFELNRVNTELQHLKICVKVLENKKIELENSF*
Ga0114994_1010041873300009420MarineMSIELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENKKTELELSLTY*
Ga0114994_1023812923300009420MarineMSMELHTLRAVKITKNIFELRRVNSEIQKFRHVISILENRKTELENSI*
Ga0114998_1025863323300009422MarineMELHTLRAVKITKNIFELRRVNTELQKFRQVVSILENRKSELENNMI*
Ga0114997_1010598353300009425MarineMELHTLRAVKITKTIFELHRVNTELQHLKICVKVLENKKIELEDSF*
Ga0114997_1047938713300009425MarineNIMSIELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENKKTELELSLTY*
Ga0115007_1027586453300009441MarineMSMELHTLRAVKITKNIFELQRVNTELQKFRQVVSILENRKSELESSI*
Ga0115007_1057955743300009441MarineMSIELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENRKTELESSLTH*
Ga0115003_1094526113300009512MarineFNRENIMSMELHTLRAVKITKNIFELQRVNTELQKFRQVVSVLENRKSELESSI*
Ga0114914_106112123300009601Deep OceanMSMELHTLRAVKITKNIFELQRVNTELRKFQQVVEVLEIRKLELENSF*
Ga0105173_102874713300009622Marine OceanicIMSMELHTLRAVKITKNIFELQRVNTELRKFQQVVEVLEARKSELENSF*
Ga0115000_1007409113300009705MarineTLRAVKITQNIFELNRLNTELQHLKVCVKVLENKKTELESSLTH*
Ga0115000_1037970443300009705MarineMSMERHTLRAVKITQNIFELNRVNTELQHLKICIKVLENK
Ga0115000_1060136813300009705MarineIMSIELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENKKTELELSLTY*
Ga0115000_1086529423300009705MarineMELHTLRAVKNTKNIFELRRVNSEIQKFRHVISILENRKTELENSI*
Ga0115002_1032320343300009706MarineMGMELHTLRAVKITKNIFELNRLNTELQHLKICVKVLENRKIELEDSF*
Ga0115002_1033007253300009706MarineMSMERHTLRAVKITKNIFELNRLNTELQHLKICVKVLENR
Ga0115001_1088693623300009785MarineMELHTLRAVKITKNIFELQRVNTELQKFRQVVSILENR
Ga0114999_1022755843300009786MarineMSMELHTLRAVKITQNIFELNRVNTELQHLKICVKVLENKKIELEDSF*
Ga0114999_1033078023300009786MarineMSMELHTLRAVKITQNIFELNRLNTELQHLKICVKVLENKKTELESSLTH*
Ga0114999_1036900743300009786MarineMSMELHTLRAVKITQNIFELNKVNTELQHLKICVKVLENRKIELEDSF*
Ga0133547_10069606133300010883MarineMSMELHTLRAIKITKNIFELRRINTELRKFQQVVEVLEIRKSELENNIV*
Ga0181432_102536343300017775SeawaterMSMEQHTLRAVKITQNIFELNKLNTELQHLKVCVKVLENRKAELEASF
Ga0211681_104676333300020309MarineMELHTLRAVKLTKNIFELQRVNSELRKFQQVVEVLEIRKSELENNMI
Ga0211683_1015489743300020372MarineMELHTLRAVKLTKNIFELQKVNTELRKFQQVVEVLEARKSE
Ga0211682_1007690233300020376MarineMELHTLRAVKITKNIFELQRVNTELRKFQQVVEVLEIRKLELENSF
Ga0211686_1001893033300020382MarineMSMELHTLRAVKITKNIFELQRVNTELRKFQQVVEVLEARKSELENSF
Ga0206683_1002631633300021087SeawaterMSMELHTLRAVKITKNIFELRRVNSEIQKFRHVISILENRKTELENSI
(restricted) Ga0233428_1005556173300022888SeawaterMSMELHTLRAVKITKNIFELRRVNTELQKFRQVVSVLENRKSELESSI
(restricted) Ga0233429_1007151183300022902SeawaterMSMELHTLRAVKITKNIFELQRVNTELRKFQQVVEVLEIRKSELENSF
(restricted) Ga0233429_1013314103300022902SeawaterMSMELHTLRAVKITKNIFELRRVNTELQKFRQVVSVLENRK
(restricted) Ga0233429_106320113300022902SeawaterIMSMELHTLRAVKITKNIFELRRVNTELQKFRQVVSVLENRKSELESSI
(restricted) Ga0233438_1016469943300024255SeawaterMSMELHTLRAVKITKNIFELRRVNTELQKFRQVVSILENRKSELENNMI
(restricted) Ga0233440_103028173300024258SeawaterMSMELHTLRAVKITKNIFELRRVNTELQKFRQVVSVLEN
(restricted) Ga0233440_110090753300024258SeawaterMSMELHTLRAVKITKNIFELRRVNTELQKFRQVVSVLENR
(restricted) Ga0233437_113708233300024259SeawaterMSMELHTLRAVKITKNIFELRRVNTELQKFRQVVSVLENRKS
(restricted) Ga0233439_1044169723300024261SeawaterRAVKITKNIFELRRVNTELRKFQQVVEVLEIRKSELENSF
Ga0209634_105710583300025138MarineMELHTLRAVKITKNIFELQRVNTELQKFRQVVSILENRKSEL
Ga0209657_102551433300025676MarineMELHTLRAVKITKNIFELQRVNTELRKFQQVVEVLEIRKSELENSF
Ga0208879_132857713300026253MarineMELHTLRAVKLTKNIFELQRVNSELRKFQQVVEVLEIRKSELENN
Ga0209384_102054353300027522MarineMSMELHTLRAVKLTKNIFELQRVNSELRKFQQVVEVLEIRKSELENNMI
Ga0209383_112779933300027672MarineMELHTLRAVKITKNIFELQRVNTELRKFQQVVEVLEARKSELENSF
Ga0209710_112088343300027687MarineMELHTLRAVKITKNIFELRRVNTELQKFRQVVSVLENRKSELESSI
Ga0209815_107001553300027714MarineMELHTLRAVKLTKNIFELRRVNTELRKFQQVVEVLEIRKSELENSF
Ga0209815_120896523300027714MarineMELHTLRAVKLTKNIFELQKVNTELRKFQQVVEVLEARKSELENSF
Ga0209709_10000914153300027779MarineMSMELHTLRAVKITKNIFELRRINTELRKFQQVVEVLEIRKSELENNIV
Ga0209709_1000252193300027779MarineMSMEKHTLRAVKITQNIFELNRVNTELQHLKICIKVLENKKIELEDSF
Ga0209709_1000413483300027779MarineMSMELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENRKTELESSLTH
Ga0209709_10004541113300027779MarineMSMERHTLRAVKITKNIFELNRLNTELRHLKICVKVLENRKIELEDSF
Ga0209709_10005738163300027779MarineMSMERHTLRAVKITQNIFELNRVNTELQHLKICVKVLENKKIELENSF
Ga0209709_1002805373300027779MarineMGMELHTLRAVKITKTIFELHRVNTELQHLKICVKVLENKKIELEDSF
Ga0209709_1002989283300027779MarineMSIELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENKKTELELSLTH
Ga0209709_1005904313300027779MarineMSIELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENKKTELELSLTY
Ga0209709_1007925143300027779MarineMSIELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLE
Ga0209709_1027361513300027779MarineMELHTLRAVKITKNIFELRRVNTELQKFRQVVFILENRKSELENNMI
Ga0209709_1033106433300027779MarineMGMELHTLRAVKITKNIFELHRVNTELQHLKICVKVLENRKIELEDSF
Ga0209502_1014957223300027780MarineMELHTLRAVKITKNIFELRRVNTELQKFRQVVSILENRKSELENNMI
Ga0209711_1012007723300027788MarineMSMELHTLRAVKITKNIFELQRVNTELQKFRQVVSVLENRKSELESSI
Ga0209711_1013021713300027788MarineRAVKIIKNIFELQRVNTELQKFRQVVSVLENRKSELESSI
Ga0209711_1030296513300027788MarineMELHTLRAVKITKNIFELQRVNTELQKFRQVVSILENRKS
Ga0209091_1044706723300027801MarineMELHTLRAVKITKNIFELRRVNTELQKFRQVVSILENRKSELESSI
Ga0209091_1050222023300027801MarineMELHTLRAVKITKTIFELHRVNTELQHLKICVKVLENKKIELEDSF
Ga0209035_1013840813300027827MarineMSMEKHTLRAVKITQNIFELNRVNTELQHLKICIKVLENKKIELENSF
Ga0209089_10006239133300027838MarineMSMERHTLRAVKITKNIFELNRLNTELQHLKICVKVLENRKIELEDSF
Ga0209089_1003111973300027838MarineMELHTLRAVKVTKNIFELHRVNTELQHLKICVKVLENRKIELENSF
Ga0209089_1030520523300027838MarineMSMELHTLRAVKITQNIFELNRVNTELQHLKICVKVLENKKIELEDSF
Ga0209089_1043463323300027838MarineMSMELHTLRAVKITQNIFELNRLNTELQHLKICVKVLENKKTELESSLTH
Ga0209089_1049752113300027838MarineMGMELHTLRAVKITKNIFELNRLNTELQHLKICVKVLENRKIELEDSF
Ga0209403_1025779033300027839MarineMELHTLRAVKITKNIFELHRVNTELQHLKICVKVLENRKIELEDSF
Ga0209403_1041097333300027839MarineMGMELHTLRAVKITKNIFELNRLNTELQHLKICVKVLENKKIELEDSF
Ga0209402_1040414823300027847MarineITKNIFELQRVNTELQKFRQVVSVLENRKSELESSI
Ga0209402_1051333523300027847MarineMSMELHTLRAVKITQNIFELNRLNTELQHLKICVKVLENKKTELEASLTH
Ga0257107_103194113300028192MarineMSMEKHTLRAVKITQNIFELNRVNTELQHLKICVKVLENKKIELEDSF
Ga0257107_103504153300028192MarineMSMELHTLRAVKITQNIFELNRLNTELQHLKICVKVLENRKTELESSLTH
Ga0257107_105738133300028192MarineMELHTLRAVKITKNIFELHRVNTELQHLKICVKVLENRKIELENSF
Ga0257111_102914923300028535MarineMERHTLRAVKITKNIFELNRLNTELQHLKICVKVLENRKIELEDSF
Ga0257111_122789923300028535MarineMSMERHTLRAVKITKNIFELNRLNTELQHLKICVKVLENRKIELEESF
Ga0308010_100857233300031510MarineMSMERHTLRAVKITQNIFELNRVNTELQHLKICVKVLENKKIELEDSF
Ga0308010_103684933300031510MarineMNMELHTLRAVKITKNIFELRRVNTELRKFQQVVEVLEIRKLELENSF
Ga0308010_117285033300031510MarineMSMEKHTLRAVKITQNIFELNRVNTELQHLKICIKVLENKKIEL
Ga0307488_1041122123300031519Sackhole BrineKITKNIFELQRVNTELQKFRQVVSVLENRKSELESSI
Ga0308019_1033721913300031598MarineKNIFELQRVNSELRKFQQVVEVLEIRKSELENNMI
Ga0307989_100492913300031603MarineMSMELHTLRAVKITKNIFELRKVNTELRKFQQVVECLENRKSELENNIV
Ga0308009_1016391413300031612MarineMSMERHTLRAVKITQNIFELNRVNTELQHLKICIKVLENKKIELED
Ga0307985_1014715123300031629MarineMSMELHTLRAVKLTKNIFELRKVNTELRKFQQVVDALETRKAELEML
Ga0308004_10018838113300031630MarineRAVKITKNIFELQRVNTELRKFQQVVEVLEIRKSELENSF
Ga0307986_1002234313300031659MarineMSMELHTLKAVKITKNIFELRRINTELRKFQQVVEVLENRKSELENM
Ga0307986_1003662263300031659MarineMSMEIHTLRAVKITKNIFELRKVNTELRKFQQVVEVLEIRKSELENMI
Ga0307986_1004965033300031659MarineMELHTLRAVKITKNIFELRRVNTELRKFQQVVEVLEIRKSELENNMI
Ga0307986_1006499213300031659MarineMSMELHTLRAVKLTKNIFELQRVNSELRKFQQVVEV
Ga0307995_124249513300031696MarineMSMELHTLRAVKITKNIFELRKVNTELRKFQQVVEVLENRKSELENNMI
Ga0307995_128295523300031696MarineMSMELHTLKAVKITKNIFELRRINTELRKFQQVVEVLENRKSELENMI
Ga0308013_1009912353300031721MarineMSMEKHTLRAVKITQNIFELNRVNTELQHLKICIKVLENKKIELE
Ga0372840_091543_215_3613300034695SeawaterMSMELHTLRAVKITQNIFELNRVNTELQHLKICVKVLENRKIELEDSF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.