NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0257107_1000031

Scaffold Ga0257107_1000031


Overview

Basic Information
Taxon OID3300028192 Open in IMG/M
Scaffold IDGa0257107_1000031 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46707
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (70.27%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011529Metagenome / Metatranscriptome290Y
F035723Metagenome171Y
F065937Metagenome / Metatranscriptome127N
F070936Metagenome / Metatranscriptome122Y
F072758Metagenome121Y
F090256Metagenome108N
F105359Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0257107_100003126F072758N/AMDELYEKFEKLAISNEPLMAAGIMMAQAMKIYKAMLSADEFKLMTEHILESRDMIQTPDIPKLH
Ga0257107_100003129F090256AGGAGGVQSNTSTVTVDTGEIGEQLIEEFFPKAERTDDWFDSKKDGTIREKTYEVKTFRLNNKDQGFWVDSSQFRKLDNVDILYFVKIPESLEEGATIYECMDHTGEDAYEAFKLGPIKQMRCYFLDNCKKITNIRDERTDVLYHNSVAMSKHKRFT
Ga0257107_100003146F070936GGAMAINVQAALQEMQEAIELKEKWNEKMSIKGLGEFRKAYETLKKSGVDKRFVASMEKFYDDLVIGGLYSSRSAEDAGIVRIDGKTKYKNANW
Ga0257107_100003164F105359N/AMNNIDKIAKLIATLDNDGLNKIIPIFKQHRKTLAHATKMDLKVGMKVSWGAMGHGVVDKINRTKCVCTRNDGQKWTIPMTMLRIQ
Ga0257107_100003168F011529GGAGMRWAEATIEKRKLEGVRLRSCRLWLDEKGFHPFLDQDELLRPDMQKSMSCKYNELPKEAWDLMDKYDAEKARKSRYAT
Ga0257107_100003171F035723GGAGMVNLVTNKAEETTHLRSKSKFYIAGWVANRECENPQKLPESCKGDIVVERWHEEYLTGYGDFLANGECLMNR
Ga0257107_100003174F065937N/AMFKKLLVATAAMAFSAVTFAGIALTGLYEGTLDSHGAYTQDITTTMKGSAGNSSVTVVLDGAFDVHDMYVETTSGPLTFTLGDKSGDDPDSVSIGVTATSGGFTVGLNQVSGGSTTIDVGGALAGI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.