Scaffold Ga0265593_1134705

Overview

Basic Information

• Taxon OID: 3300028178
• Scaffold ID: Ga0265593_1134705
• Source Dataset Name: Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 641
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007470	Metagenome / Metatranscriptome	350	Y
F039125	Metagenome / Metatranscriptome	164	Y
F045058	Metagenome / Metatranscriptome	153	Y
F047650	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265593_11347051	F045058	N/A	LTFNVGTGSIEKVSRIRDKYNLTESYVSEYETTGY
Ga0265593_11347052	F007470	AGGAG	MDYQDGFQDGVKFAREVIINNLRLWAETSDDGGVMDEIGDRIEFGVINYEL
Ga0265593_11347053	F047650	GGAG	MNSEDINPIYYCDSCSVARASHLIKLLDGELAFCGHHYFKNKEALDKQSYETIQLDKAEEAIPQLTKAE
Ga0265593_11347054	F039125	GGAG	MGDRANFGFRDSRENVVFLYGHWAGHNMLAKLANAVQAAESRWQDDSYATRICI