NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265593_1047020

Scaffold Ga0265593_1047020


Overview

Basic Information
Taxon OID3300028178 Open in IMG/M
Scaffold IDGa0265593_1047020 Open in IMG/M
Source Dataset NameSaline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)Depth (m)36
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003965Metagenome / Metatranscriptome459Y
F024319Metagenome / Metatranscriptome206Y
F087194Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0265593_10470203F087194GGAMNIDEYKQYVEAQRLSSLGIALEALMKSSAMQKEMENK
Ga0265593_10470204F003965AGGMTQLITVCKEHTPMVSAISEVSDTQYTFCQDCEQNVERWYNDTDPERLPMWTDWKVSI
Ga0265593_10470205F024319N/AYQNESDAKRLGYVTCSAGCGRVTAWSLCVMCGGNYAEHNLVGKGSK

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