Scaffold Ga0265593_1047020

Overview

Basic Information

• Taxon OID: 3300028178
• Scaffold ID: Ga0265593_1047020
• Source Dataset Name: Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1249
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Depth (m): 36

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F024319	Metagenome / Metatranscriptome	206	Y
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265593_10470203	F087194	GGA	MNIDEYKQYVEAQRLSSLGIALEALMKSSAMQKEMENK
Ga0265593_10470204	F003965	AGG	MTQLITVCKEHTPMVSAISEVSDTQYTFCQDCEQNVERWYNDTDPERLPMWTDWKVSI
Ga0265593_10470205	F024319	N/A	YQNESDAKRLGYVTCSAGCGRVTAWSLCVMCGGNYAEHNLVGKGSK