Basic Information | |
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Taxon OID | 3300028122 Open in IMG/M |
Scaffold ID | Ga0256371_103674 Open in IMG/M |
Source Dataset Name | Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1691 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008695 | Metagenome / Metatranscriptome | 329 | Y |
F023593 | Metagenome / Metatranscriptome | 209 | N |
F058909 | Metagenome / Metatranscriptome | 134 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0256371_1036741 | F023593 | N/A | MSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDIVDIDYYKQNTIISG |
Ga0256371_1036743 | F058909 | AGAAG | MKLTNVEKNVLLVALDHMEEHIVDLMKERELRGVGFDVWKERLNSCKTIRIKLK |
Ga0256371_1036745 | F008695 | N/A | MIKEYEISKVTHEWCESNDRWIYIEYNAQRKIIGLNFMQGDEYDYFKAKWCHNDQALMQFYGTMLYTFPIEKASVNTLEFINKVMWSYHSAIVANEDHSDYGEGLRDQS |
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