NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256371_103674

Scaffold Ga0256371_103674


Overview

Basic Information
Taxon OID3300028122 Open in IMG/M
Scaffold IDGa0256371_103674 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1691
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008695Metagenome / Metatranscriptome329Y
F023593Metagenome / Metatranscriptome209N
F058909Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0256371_1036741F023593N/AMSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDIVDIDYYKQNTIISG
Ga0256371_1036743F058909AGAAGMKLTNVEKNVLLVALDHMEEHIVDLMKERELRGVGFDVWKERLNSCKTIRIKLK
Ga0256371_1036745F008695N/AMIKEYEISKVTHEWCESNDRWIYIEYNAQRKIIGLNFMQGDEYDYFKAKWCHNDQALMQFYGTMLYTFPIEKASVNTLEFINKVMWSYHSAIVANEDHSDYGEGLRDQS

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