Basic Information | |
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IMG/M Taxon OID | 3300028122 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133511 | Gp0294658 | Ga0256371 |
Sample Name | Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3M |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 41533276 |
Sequencing Scaffolds | 25 |
Novel Protein Genes | 28 |
Associated Families | 28 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses | 1 |
All Organisms → Viruses → Predicted Viral | 4 |
Not Available | 14 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Extreme Environments Viral Communities From Various Locations |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → coastal water body → brine |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
Location Information | ||||||||
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Location | USA: Alaska | |||||||
Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000637 | Metagenome / Metatranscriptome | 969 | Y |
F003058 | Metagenome / Metatranscriptome | 510 | Y |
F003647 | Metagenome / Metatranscriptome | 475 | Y |
F004988 | Metagenome / Metatranscriptome | 416 | Y |
F007945 | Metagenome | 342 | Y |
F008307 | Metagenome / Metatranscriptome | 335 | Y |
F008695 | Metagenome / Metatranscriptome | 329 | Y |
F010368 | Metagenome / Metatranscriptome | 305 | N |
F011798 | Metagenome | 287 | Y |
F013049 | Metagenome / Metatranscriptome | 275 | Y |
F023212 | Metagenome / Metatranscriptome | 211 | Y |
F023447 | Metagenome / Metatranscriptome | 210 | Y |
F023593 | Metagenome / Metatranscriptome | 209 | N |
F033250 | Metagenome | 178 | N |
F037765 | Metagenome / Metatranscriptome | 167 | Y |
F038862 | Metagenome | 165 | N |
F039337 | Metagenome | 164 | N |
F044145 | Metagenome | 155 | N |
F049627 | Metagenome / Metatranscriptome | 146 | N |
F049645 | Metagenome / Metatranscriptome | 146 | N |
F055205 | Metagenome | 139 | Y |
F055714 | Metagenome | 138 | N |
F058516 | Metagenome / Metatranscriptome | 135 | N |
F058909 | Metagenome / Metatranscriptome | 134 | Y |
F082818 | Metagenome / Metatranscriptome | 113 | N |
F094394 | Metagenome | 106 | N |
F097149 | Metagenome / Metatranscriptome | 104 | N |
F103918 | Metagenome | 101 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0256371_101838 | All Organisms → Viruses | 2332 | Open in IMG/M |
Ga0256371_103674 | All Organisms → Viruses → Predicted Viral | 1691 | Open in IMG/M |
Ga0256371_104050 | All Organisms → Viruses → Predicted Viral | 1608 | Open in IMG/M |
Ga0256371_105782 | All Organisms → Viruses → Predicted Viral | 1311 | Open in IMG/M |
Ga0256371_108039 | Not Available | 1069 | Open in IMG/M |
Ga0256371_108205 | All Organisms → Viruses → Predicted Viral | 1055 | Open in IMG/M |
Ga0256371_109498 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium | 959 | Open in IMG/M |
Ga0256371_110799 | Not Available | 874 | Open in IMG/M |
Ga0256371_110869 | Not Available | 870 | Open in IMG/M |
Ga0256371_110966 | Not Available | 864 | Open in IMG/M |
Ga0256371_112526 | Not Available | 789 | Open in IMG/M |
Ga0256371_112715 | Not Available | 781 | Open in IMG/M |
Ga0256371_117163 | Not Available | 629 | Open in IMG/M |
Ga0256371_117482 | Not Available | 620 | Open in IMG/M |
Ga0256371_117579 | Not Available | 617 | Open in IMG/M |
Ga0256371_118225 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium | 598 | Open in IMG/M |
Ga0256371_119112 | Not Available | 577 | Open in IMG/M |
Ga0256371_119289 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 573 | Open in IMG/M |
Ga0256371_119571 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 567 | Open in IMG/M |
Ga0256371_119953 | Not Available | 559 | Open in IMG/M |
Ga0256371_120767 | Not Available | 543 | Open in IMG/M |
Ga0256371_122305 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | 515 | Open in IMG/M |
Ga0256371_123064 | All Organisms → cellular organisms → Bacteria | 503 | Open in IMG/M |
Ga0256371_123170 | Not Available | 501 | Open in IMG/M |
Ga0256371_123243 | Not Available | 500 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0256371_101838 | Ga0256371_1018387 | F013049 | MQQDVETQFHTIDLFIRSILDDMRKVSMSTKKADTMAYIDAWKTE |
Ga0256371_103674 | Ga0256371_1036741 | F023593 | MSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDIVDIDYYKQNTIISG |
Ga0256371_103674 | Ga0256371_1036743 | F058909 | MKLTNVEKNVLLVALDHMEEHIVDLMKERELRGVGFDVWKERLNSCKTIRIKLK |
Ga0256371_103674 | Ga0256371_1036745 | F008695 | MIKEYEISKVTHEWCESNDRWIYIEYNAQRKIIGLNFMQGDEYDYFKAKWCHNDQALMQFYGTMLYTFPIEKASVNTLEFINKVMWSYHSAIVANEDHSDYGEGLRDQS |
Ga0256371_104050 | Ga0256371_1040504 | F082818 | MATNIRTVNKRGGDGVIIATNGRTRVLGVHSYSTIAGVIAIGDKTGAVITYEVPASAESDMYFGEMGVLCSATVTISTPNAGSVTLITG |
Ga0256371_105782 | Ga0256371_1057821 | F003647 | GQRIIMVMCEWTLADVKNRASNKAFAKVTILKLDIESYKQELKNGTYGGITHAEAEQVLEGYKTELQVWNYITELIEKQ |
Ga0256371_105782 | Ga0256371_1057825 | F003058 | MDRIAEMVVDKIISRQKAYDEEFKAEIQEMVGKDADIEFGTITEDEIIAEELVKLQDRLNQLETKEDYEAASIVANKI |
Ga0256371_108039 | Ga0256371_1080391 | F023447 | METQAFMGTGELIPRLMAQVGNAKFGMALANKNGFLNADGSLSAKGIARNGMTAEGRAIDRAGGTGVYNASTNSVTQY |
Ga0256371_108205 | Ga0256371_1082053 | F058516 | MSNARHCASCGKKYYPKAWNSYPEDDYIYDNGETTRFVVRPQDKRFHSLGCMKEFIARNSMAFANLVDSVSHNVIEDINNQTIEKG |
Ga0256371_109498 | Ga0256371_1094982 | F000637 | MSHASDATKAWVSAIPKKNADGNVIEWSVQYKYTKTTHPHTFSGNVKIDTPSKAPGSYTKAEILALFDVAHWDDMYNKKYTVWTADAVVETTDSSFDVTSLSDS |
Ga0256371_110799 | Ga0256371_1107992 | F011798 | MNIKDVDKWVETAEIGSSVIYYTGNLSEDRCYAGTHFAKDVADIPKAFAAHAENKTIEFFQKRKTKMDKSKTPKRPIFDYIARKIA |
Ga0256371_110869 | Ga0256371_1108692 | F049627 | MKQIILLAGLLTATATPPTKLYEVTHLIIESSTAVDVWSSGHFVRTDIQVTPDSIHYFEAIGKHNKMIKTESTDYSDVLSITDSSLTVQQTDQVITYLLFNLQNHYE |
Ga0256371_110966 | Ga0256371_1109664 | F055714 | MSKWTSTSVVINSATEEMVKSALKDGWNFEVLTEGEHLCEESTDFDEIMENIHAVDGILEIHIHKVGEESDWCNVILHNGDPDCEISDCTSDGYIDKWTERTDFGQKTWNDGFK |
Ga0256371_112526 | Ga0256371_1125262 | F033250 | MDVKLTTTRQLSPVFDEGGQIDLEALRPLLEQHAATMVSDAQSGWPVDTGISRAAWTAEIDVSPSQLFVSLINEARQRGRGYAVYIHRARSPRLVYTEVEERFTLNLIPALQADIALTLAESMRG |
Ga0256371_112715 | Ga0256371_1127152 | F049645 | MKKLFTTLSILFITLTTQAQKQFEGEWVSKTSSHVTTIIASDYAVLKVFNFSFKEDSYIEEKILVQTDYEFTTRLYNSRNGYTAIVKYKMKGDILICEFSGDFHGIVELTKKE |
Ga0256371_117163 | Ga0256371_1171632 | F094394 | MIELLLFLFTDVDNRMGNFHTVKHKFNTYQECNDYIKEHTIEENIYTPTGQVIGLTYCKPIDTDK |
Ga0256371_117482 | Ga0256371_1174822 | F055205 | HMSNLDLIKAERKQWRENTILNSIAIRKLAVELDTVRKQKDELQEKLNNINKISIIENGKTNLADDQIKIK |
Ga0256371_117579 | Ga0256371_1175791 | F039337 | MSLIVHYNTMSKYNEETFKAEDRDQADTLGWMLMGTGISEITEKTIPELLFRVRFMDFSYGKPYFTSDPSDEQIITLFKAHLGLKIEITNRGIRNLNTRRRFMVNQLDNMERRIERKIAKVQ |
Ga0256371_118225 | Ga0256371_1182251 | F004988 | VPKLIETICPRCDGNGFIKIPPVIATVGDKATEMDCPMCEEIITHMGQRITTHNGYVMLPIEHTRKNVEGGRESKIKWSGETLPEVGK |
Ga0256371_119112 | Ga0256371_1191122 | F097149 | MSGWLALMAVTYVLYVMFERGSISSPYKKDIKLSVDDPNLEDKIRKKYFEEN |
Ga0256371_119289 | Ga0256371_1192892 | F010368 | SHLQDTTTIQFVSRKNGAGTSFDMPITLLDSTLPTQTATQQVIPTNSVRLGFVFEPAGTDSGQTVGQYKIYMNGNIVGTQSATTVPDDTALEMNIMCAHKGTAANHLVVDYFNTVQSRVSGTSVTA |
Ga0256371_119571 | Ga0256371_1195712 | F037765 | MTTHFSNGVTNVRGKSGGTSLFSSIKQPLITGGYEQEQAYQNDFNVFNPSDYETVTSTGASDFQLAQFAGGWLRQGDNAPAAGEIQGVAGYDVWNYSDTKKWMFET |
Ga0256371_119953 | Ga0256371_1199532 | F103918 | MWVLVWMQLMTGMPLQYYQLNSFESRTLCEQYKEQAKILVTNTNMTVACLNVRIQK |
Ga0256371_120767 | Ga0256371_1207672 | F007945 | MMSIIKGHTSIFQLIGDAYSKKDVQRFYYAYQLCVRAKTNMKVLHKYLINRHNFTRIDCANLLRSARIVK |
Ga0256371_122305 | Ga0256371_1223051 | F023212 | TEEGWDVHDPGYYDEMSKRLKSSGLTYFNKSEENTSKAAENVVQKNNRVQSPVAGVSRKTGTSGNRVKLTSDDLSTAKTFGIDISDEVALKRFAKEVKSFSDTGQ |
Ga0256371_123064 | Ga0256371_1230641 | F008307 | MVKVLKQSSLEISADVEEFFDGETIEEATKKAHYQIMPGELAKINITDNKFVKATIKVVGEEHDYESKQ |
Ga0256371_123170 | Ga0256371_1231701 | F044145 | MSALVAKLQEQYEDQYQRSITPVELRQLNSVESTFTLNKPSYAVLDTDNNKAIHLHGANYQLIPYERILSGLSTALDKYEIDISDTSIKFNVSPD |
Ga0256371_123243 | Ga0256371_1232431 | F038862 | MSDKAWHISYLSAIVGPCAATTDDGCMAWEDEEKSDFVMRLLDRDNDGKNLLVVIQPEMNELALYTVTGYCVANDLPYMIKDWDALSAEG |
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