Scaffold Ga0209526_10126589

Overview

Basic Information

• Taxon OID: 3300028047
• Scaffold ID: Ga0209526_10126589
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1794
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002474	Metagenome / Metatranscriptome	556	Y
F028133	Metagenome / Metatranscriptome	192	Y
F037088	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209526_101265891	F028133	N/A	MSELDKLDANEKAALESTLYRCRALVGRIGEELRNKKPEHFVDERSLADFHAALERAAWVLEQTIHTPTSTAKGLEGSRKRHR
Ga0209526_101265892	F037088	GAG	MLMGLDDGILKRYGLPKPMVERALIQVYQTVVLGEQRYRDHS
Ga0209526_101265895	F002474	N/A	VRACALHVASSPKVYLLPLYRLVYRHHNNQILVLIKPGASPIHARMRASLAKLDEGEFTEGHELDRKWRVSKEMIGRRLSQGEAKRWLAKFE