Scaffold Ga0265296_1005261

Overview

Basic Information

• Taxon OID: 3300028032
• Scaffold ID: Ga0265296_1005261
• Source Dataset Name: Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10740
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021446	Metagenome / Metatranscriptome	219	Y
F093357	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265296_100526110	F093357	AGGA	MKKFDQAWRIKRLLAERGETISSLSRKLDRPCGSVANNIYGYRTNAQLRGEIAKFLGCGVGELFEGDISSSRNQA
Ga0265296_10052614	F021446	AGG	MFKVEQHMKTLSIALMAAFMLVLAATSTGQAEDNNSLDHDPTVGGKYIYRAKHMAQTLFVRGSKLSEINELTLLIEIVGQADVRINCHLLAKRQEGNILIIDYAWYPGGDTYEAKIMGGTIINRKTKGWLVGREEMFVRE