Scaffold Ga0247723_1021525

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1021525
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2162
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F018135	Metagenome	236	Y
F036551	Metagenome	169	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_102152512	F003212	AGGAGG	MKDKWLVTLEIKTYDGDPRRWDWDYIFTGEDEVKAVSSEFKGRVLPE
Ga0247723_10215254	F086805	GGAGG	VRELSKRGNLVAGIVIGLIIAGLVWVSGNVWITEEGRICLGSMLECM
Ga0247723_10215255	F018135	AGG	MTIERVAHSGAYVISAFVGEGAGEYLFTRTYYGYTMAQAKAQFKIAIAEEAK
Ga0247723_10215258	F036551	GAGG	MDTMDLLRALSTEERECELCGSRSWRILHAGDESNCECEGECLRVCDNPLIEDGCDGVAILINKEGK