Scaffold Ga0247723_1014961

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1014961
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2805
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F061853	Metagenome / Metatranscriptome	131	Y
F105175	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10149613	F105175	AGGAG	MADGKDLNGFTSPKVNDASVWTGEQYAADPAAAFPATDMSNQASAQGPK
Ga0247723_10149614	F001280	AGG	MCVECGCEAFGSESGMSNIPGGILNVSTDGEAGLTLNMTATPEQRERFINEQ
Ga0247723_10149615	F001176	GAG	MSNNGTGMDTPPNNTPSGAVTSQEATRKNPSQGKFKSGFSGPRPATKIDTNKHGIRRETILGQKKTKPKKV
Ga0247723_10149617	F061853	GAG	MNKKTITLIGLGLSLAAIAYVTYNSLSQLKDIDYDLFTTDEDEDD