Scaffold Ga0247723_1011774

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1011774
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3329
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F018135	Metagenome	236	Y
F027417	Metagenome	194	Y
F058947	Metagenome	134	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_101177413	F000821	AGGGGG	MNREYLKAKVDLCLTQAEVDIQQQEIARAIKNLERANLALTRIFNLDEEESDEQRVHDTSKEV
Ga0247723_10117743	F086805	GAGG	MRSLSKRGNLVAGIAIGLALAGIVWLSGNLWYVPETGYCIGSMVECYK
Ga0247723_10117746	F018135	GAGG	MTVERVRHSGAYVMSEIVGEGARAYLFTRTYYGYTLAQAKSRFKLALEGEGK
Ga0247723_10117747	F058947	GAGG	MISCDLQDLEELMNKAGILLTGNEYDTAQDYLQEHCSCDTYQWLLGYKIAREG
Ga0247723_10117749	F027417	GAGG	MSYDYRVTFVTDYLVITTNVCLEIDDTVGNLSDEAYEQATINGINNIVDEIGYLDETIIKDITVTLLLDDEEIELGGE