NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1010017

Scaffold Ga0247723_1010017


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1010017 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3746
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F013279Metagenome / Metatranscriptome272Y
F085348Metagenome111Y
F086805Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_101001710F003863GGAGGMESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGIHTRANAVPEVAGRTDYDRADESDDGGEA
Ga0247723_101001712F013279AGGAMQYDYRCPDCNAVLTIERSIHEEPREPSCFDCHVTMIRKWDSPAITFKGKGFYSNGG
Ga0247723_10100172F086805GAGGMRELTKRGNLVAGIAIGLLIAGLIWLSGNLWWTGTGYCIGTMASCFH
Ga0247723_10100174F085348AGGMTPTGIALKVTNKDGKVSYPSYEAYGWERINAVINGTLAIEHVAMVEIVDINGREVA
Ga0247723_10100176F003212GGAGMKDRYLVTLEIETYDGDPKRWNWDNLYIGEEDIKIISSDFKGRVLPAEGEGNE
Ga0247723_10100178F000821GAGGMNREYLEAKFDLCINQAEKNIKEEEIAEAIANLRRANSALTQLFGFEEEENE
Ga0247723_10100179F001477AGGAGGMSNVYTIHPPKSDLILFYEVVEAEGENTWGGADAGQAIQWLAHAPAGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL
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