Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1006239 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5239 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (80.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006842 | Metagenome | 363 | Y |
F029021 | Metagenome | 189 | Y |
F034906 | Metagenome | 173 | Y |
F036551 | Metagenome | 169 | Y |
F072283 | Metagenome / Metatranscriptome | 121 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100623911 | F006842 | GAG | MKATPAICGDHLVPISECDCLSYMREIESSAKRLIQLAKEREAMK |
Ga0247723_100623913 | F036551 | GGAG | MNETLEALLNDEIRVCELCGSNEWRILHAGDESNCECEGECLRVCDSTLLSDDGCDGVAILINKGERI |
Ga0247723_100623914 | F029021 | AGGAG | MNICQFCGWEIARVDWYHRYNNKLICDNCVMDTMNERERERAI |
Ga0247723_100623918 | F034906 | GAG | MNNTHRIKAAADQAVRQRNYLRARSRALTRLANDYPNVYQLYLEEEKIADENMGKKWLDIDGNTSLANTRTQ |
Ga0247723_10062398 | F072283 | AGGAGG | MQTMQDLINAIKPILPNALVIDTDTGILIETGLELGLGGLLQTLEREGA |
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