NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1004625

Scaffold Ga0247723_1004625


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1004625 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6435
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (95.45%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006618Metagenome368Y
F006842Metagenome363Y
F018703Metagenome233Y
F022400Metagenome214Y
F029021Metagenome189Y
F048091Metagenome148Y
F072283Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100462510F072283GGAGMNTMEDLIEAIKPILPNALVIDTDSGILIETNLELGLGGLLQTIEREGE
Ga0247723_100462511F006618AGGAGMSKIKQHLEKQIVIKGKEHEETGWKRYVYFEYEGNEYELTLFYDEFTGYDIFWREPDSTPDWVVEWDSEAHNGMSFEHYLDDLTWENN
Ga0247723_100462514F048091GAGGMIEHHFIIKYSKEGGWEWDTDSEELRYSDGTVWNEQTQEWSSGYAGWSEEKGEAEYVDDDDLIGEQLTAILEIANGAKALI
Ga0247723_10046252F022400AGTAGGMVLYQVGRQRKMRRTTTERSQRTTLRLVSGGVGERASAYSPFGPVRVGLITTQRTSEDQVLTELLNSLERKIAELSIRSCEVLNIFLSDTKHLVRHTDSFLKTDTTDSI
Ga0247723_10046253F018703AGGTGGLSNTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRAYLEEEMKADDQMGKKWLDISGNTKSARSRSR
Ga0247723_10046257F029021GGAGMNLCQFCGWEIARVDWYHRYNNKLICDNCVMDTMSEREREEVR
Ga0247723_10046259F006842GAGGMKATPAICGDHLVPISECDCLSYMREITRSAEKLIQLTKEREAMK
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