Scaffold Ga0247723_1004397

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1004397
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6689
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F005175	Metagenome / Metatranscriptome	409	Y
F105047	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100439712	F004111	GAGG	MKDKLKQVNDLCAAHGSYLNQHGKKTVSAWSKIKYFREVFGTEYGINCVIQEHSDRYVIMKCIITKSDPEHIVATGFSKQYRDKPSYLEIAETFAITRALSFMGILEEDITSKEEYDELEIPVQPMNTKGIGPINVDTNTINQLLTKVDFAPHTAKLDFLWRANKDLLNQIKIKDLSTYNVILNRFNSKRDQITTQNEV
Ga0247723_10043975	F005175	AGG	MIDQPLHVEDVIDMYNEKILILQKEIDRLNLELECKQIELMQERAKNND
Ga0247723_10043977	F105047	AGGAG	MRSINFDKVIVEWMDINSCDDAWNSEEHFKDLMPASCTTIGYLYEDTPHFVKTFATFSFNADDTIDFGDCVVIPKGCVVSIKKLEN