Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1001581 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13166
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (26.47%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

13166

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (26.47%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011488	Metagenome / Metatranscriptome	290	Y
F012977	Metagenome / Metatranscriptome	275	Y
F018910	Metagenome / Metatranscriptome	232	Y
F033041	Metagenome / Metatranscriptome	178	Y
F044502	Metagenome	154	Y
F092059	Metagenome	107	N
F092066	Metagenome / Metatranscriptome	107	Y
F099314	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100158111	F092066	AGGA	MKIDGGAVEFFQSIPDEMLVEIAFYDRRALERLCVALTLDVQIIVEEAERMKKSKKIKSY
Ga0247723_100158118	F044502	N/A	MTKGFGYVRSLSYIDDMMKEQDKFNGLSKGQVKQIIRRNMITRVKSSKKVYDRKKFKKDLES
Ga0247723_100158119	F033041	N/A	MEKIKINPNFKFTFDTDVDLRRAELTGYIESYDMVRICVKRLDNGNQVDFPIKTREDYFETVASLNERSNEFDMVEIYQDTHMFDMYDYI
Ga0247723_100158122	F099314	GGA	MSEKRGLTGKLLYDFNTAKAVYVKNKDGRFVRVTERDFRSYNGDRWIFEKVNDEWQYTPYNGPLYFHNTNRKCKQPVGEGKIQYMVNKPWVSVRRPHERYLED
Ga0247723_100158123	F011488	GAGG	MSMTNEELIEELYHKAHVKGFFHELHDKVKELTNNHKYKCKHDLVRTAYNELKKIKLAQPSAQN
Ga0247723_100158125	F092059	AGG	MWLQNNFKLVMIGGLTLILGLSFMGARKTHKEIKKGEAQWLLKKKK
Ga0247723_100158130	F012977	N/A	MENTFIYNLSETEYLVFKSQRDCFELFSGHEGSASNSKLATYRGGKWLFEDFNQKKLFWFLFNIYKKDFGKALKQYIRSLNEKPKTYMITCAKRRVDIKITKMKRNVWDWFYGTFYGK
Ga0247723_10015816	F018910	N/A	MKNLITEEFKEKFKTAFARFMNVTIVASTLIAGFGLGYYFQELKMKPQAVNETILNKEVRIAIDSENKLIIMDRKTGQYVIYSDSVGSAIFKMYAAKIASPVSTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1001581

Overview

Ecosystem & Geography

Associated Families

Sequences