Scaffold Ga0247723_1001253

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1001253
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15197
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (91.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002935	Metagenome	519	Y
F003965	Metagenome / Metatranscriptome	459	Y
F009530	Metagenome / Metatranscriptome	316	Y
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100125340	F002935	AGGA	MRERSKGYIGQIVDGKKLAVIANGIYNLQYSSDFSECTVDNLLFITLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTEDISDYIRVFGDRLDNNCSLWQSKMSVAEDTILV
Ga0247723_10012537	F009530	GAG	MTITYSLWQGSRLLSIDNIATDIKEIDKLINTLNESDLGKKVKFSANVQEIKVTK
Ga0247723_10012538	F087194	GGA	MTLDEYKQYIEAQRLSSLAIALEALTKSKSLQERESK
Ga0247723_10012539	F003965	AGGTGG	MTTLTTNTVCKEHTPHLSAISQVGDDQFTFCEVCENNIERWYDDTDDERLPMWRDWKVSK