Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1000970 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17580
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (93.94%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

17580

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (93.94%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F006622	Metagenome	368	Y
F025940	Metagenome	199	Y
F029105	Metagenome	189	Y
F058801	Metagenome	134	Y
F061791	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10009701	F025940	N/A	MATAPVSRKLNLTRDQLAEFLTDQQQIRQFELLFSTVDQLQVIVGTDFEYQADTAAATANEALAQLSALAQDTAVDDAVLNAKLQQALDAIPRLAQALDLLALAPVRNNIELEHDVNGILPYANQTPRVRSNQVLTWLSM
Ga0247723_100097015	F006622	AGG	VNEYQKQFDLFLKVFVRLCVAWWVLGLLRFLPDELAEKVVNKLLGMIGL
Ga0247723_100097016	F000220	GGA	MSEEKPSDILSKVLSYVDSPFKLFALILMAVFAFSGYFVWQNQELLMGAYKESKKMPSIVEDRVEDAAAHLFKTTNATIVAVFKVNPMFGTRVLYRAYTKEGRDKTNDGLDVGLFTQNQSNNADVIKLMASEIPCGEYRSAQSEMGLWYIAKGVTYTCRISIPPDPNRFVGQITVGWDNQPADIQATRTMMEIAATMLSRSKQ
Ga0247723_100097022	F061791	AGGAG	MTEWTQEEDEAFNMVEQNSNLGKQILRANKSSGMDCCTYDCTQGRNCPVRNKTLDEVAHEFSLMKSLGDTAQSFAAFVRGMKK
Ga0247723_100097025	F058801	GGAG	MKDSNFQTPRNFADCTWVQGYGRPEPLWERVAGYILAFAIGVCLALTLVAWWSS
Ga0247723_100097031	F029105	AGGA	MIDTKLQYYFDDVVSYDNGNTVENVKVGYDYYPEEINYPDAPDYAEMFDVFVFDAQGKHITYDIPSDEYTRLMQETKTHFAQIQKDRNEI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1000970

Overview

Ecosystem & Geography

Associated Families

Sequences