NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000576

Scaffold Ga0247723_1000576


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000576 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24538
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (78.85%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F001280Metagenome / Metatranscriptome732Y
F002060Metagenome / Metatranscriptome597Y
F012975Metagenome / Metatranscriptome275Y
F014017Metagenome / Metatranscriptome266Y
F088905Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100057633F012975GGAGVLNLTLKGVEVFMERSKTKSQESFWENYDLLIWKQSAGGFTDTKGMFRKDKWGVAERISVNENGIWKLPAKYVRHFK
Ga0247723_100057636F000671GGAMRIRRRTKPNSTRTRTIKMEKILCYCCNKSKNKLSVKKSSLLPINLFLCETCITAKFEPRWVVILSGRQLGPEAVKDFIVKKRYIGTDISASELFI
Ga0247723_100057637F002060AGGMQINYLSIIIAISAALVSGMGTAIIASLRDHKKEERRRIERDQDLLKMDLKDLKIELYKIEKELTEWKDKYYNAIQELIEIKSELEATLIQLSHFEHDLDELDR
Ga0247723_100057646F014017AGGMNNIEDYLDERHRKQIADEIRYLELPPEWRPHEVIRYIVRIIEKQNG
Ga0247723_100057649F088905GGAGGMSDNTKDIDTTPVVEVKEEVKPKAEAKAAPADADATVDFWANAWANRGV
Ga0247723_100057650F001280GAGGMCIECGCEAFGSETGIIPVTITDVSKDGEAGLTLSMTSTPEQTRQFINE
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