Scaffold Ga0247723_1000501

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000501
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27011
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (70.21%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F054870	Metagenome / Metatranscriptome	139	N
F078706	Metagenome	116	N
F082685	Metagenome	113	N
F086839	Metagenome / Metatranscriptome	110	N
F104778	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100050110	F000934	AGTAG	MATLNTILAIAESVTINDQRFVGQVLSRNQRISTSEIIGVQPFSFEMKPMNYLLYSQNRQLLSALRTADREFEQYLNFGVTGWANYIYYQGDMTSAEISACQYQTSSVNKTIVLGSLPTMGATEYIVKTGDFLQIDRYSYIATADVQRGSGSTVNIPVHRTIMTTLASPMFAVIGQYGTTQSIGGNTYIGITFPVILQQYPNYTLIPMTDDSFIGWTGTFKAIEAVL
Ga0247723_100050111	F002085	AGAAG	MDVITPIVGTNNIRMADFVRVTTPSATYRFATTPNILTIPAVDSEPFDALGALVRVGDVQRDIKSTANETNITLVGIDTALLGWVLGQEIKGSLIEMWHGFFDVNNELITTGGTGGLYKFFTGYINSFTISEQWMEEIRMYVGIIGVSASSTQIILQNRTAGRFTNDNAWQFFNPGDTSMDRVAFIQGVNYFFGKSLDPSVYKT
Ga0247723_100050124	F082685	AGTAG	MDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAAMLSIVWYCIRIYEWARSKVKK
Ga0247723_100050134	F054870	AGGA	MKLLTALLIALPIASFAGESPKLRYNWVENKYNYAPASAKLKYNWTADKYEFVAPNSKLKHNSQSGNYEYVQTQIDPYKSEIGE
Ga0247723_100050140	F104778	AGGA	METIKAWMVEEFDNNNNLVWKMISFFPPDTLEWMRDIRGKKHNLVISELGVINSKKINDIEKKYDSSKFVVGL
Ga0247723_10005016	F086839	AGG	MDAKFEVSGLKETLEAFTRLQNEIGDKDAKSKVLIPSVRDAMKPVLAMAKAMAPKDTGLLERSLYVTARRPSKKDMKSRYISPKDSVISLVSTRPIPRKLKKQFQSTHGHLKGKAYTNERRKFYAEQGYAYDARAIANEFGTGKMSAKPFLRSSLESQAQSVSALLGQILKLRIESYKPKQKI
Ga0247723_10005017	F078706	N/A	MSKLGSALGKKYEENRLAVLTRSFELGGHTFKVKVPSVSEIEAIYNYAKNPDFEAIEKAYQTLTEDIRKVEGIEEKNNDIIIDGRSMKETATNKHILQYRITAYIKFLIGENGETLDQITYEDIEAEFPLAIQLTLIEKINEVISPEYKEVRSK