Metagenome Family F082685

Basic Information
Family ID	F082685
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	52 residues
Representative Sequence	MDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAALLSIVWYCIRIYEWARSKFKK
Number of Associated Samples	92
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	73.45 %
% of genes near scaffold ends (potentially truncated)	19.47 %
% of genes from short scaffolds (< 2000 bps)	65.49 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (84.071 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (21.239 % of family members)
Environment Ontology (ENVO)	Unclassified (57.522 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (60.177 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1RCM27_10176425 2RCM37_10259994 3JGI24219J26650_10149022 4JGI25908J49247_100015332 5JGI25908J49247_100045761 6JGI25908J49247_100520722 7JGI25909J50240_100243213 8JGI25909J50240_10077902 9JGI25912J50252_101397512 10Ga0049083_100312684 11Ga0049081_100132294 12Ga0049081_100278941 13Ga0049080_101764113 14Ga0079957_100116830 15Ga0079957_10756554 16Ga0070744_100543332 17Ga0070749_106617193 18Ga0075473_100757143 19Ga0102828_10498511 20Ga0102865_12538451 21Ga0105747_11288993 22Ga0105747_11639511 23Ga0114347_10371065 24Ga0114876_10401194 25Ga0114880_11290144 26Ga0105090_105557502 27Ga0114962_1000044232 28Ga0114977_106749602 29Ga0114978_100736264 30Ga0114966_101293682 31Ga0114975_100923604 32Ga0114975_103750881 33Ga0105102_101377122 34Ga0105097_100023615 35Ga0114979_105114722 36Ga0114969_105633651 37Ga0114959_104111374 38Ga0114974_1000087111 39Ga0114974_100085784 40Ga0114974_100394914 41Ga0114976_100792505 42Ga0114976_102862502 43Ga0114982_10237824 44Ga0114964_100719263 45Ga0133913_102045709 46Ga0151515_1008030 47Ga0151516_1045836 48Ga0153800_10391562 49Ga0157136_10002647 50Ga0157210_10273722 51Ga0177922_109061592 52Ga0181350_10126865 53Ga0181347_10259215 54Ga0181347_10701552 55Ga0181358_11359004 56Ga0181346_10257845 57Ga0181346_11469484 58Ga0181359_10597303 59Ga0211735_116373003 60Ga0211731_100364074 61Ga0194047_100544976 62Ga0194048_100792634 63Ga0194048_101214113 64Ga0222714_104916771 65Ga0244775_102309681 66Ga0244775_108707382 67Ga0208147_10345343 68Ga0255080_10526023 69Ga0208974_10590043 70Ga0208951_10662301 71Ga0208133_10594702 72Ga0208975_10952833 73Ga0209392_12301822 74Ga0209704_12549682 75Ga0209443_10294716 76Ga0209599_100121211 77Ga0209492_10006125 78Ga0209087_11959422 79Ga0209355_12420271 80Ga0209084_100050236 81Ga0209596_14006781 82Ga0209296_100453016 83Ga0209296_10113325 84Ga0209296_10718413 85Ga0209088_103501111 86Ga0209500_104337352 87Ga0209353_102261802 88Ga0209354_100071201 89Ga0209079_103420152 90Ga0247723_100036229 91Ga0247723_100050124 92Ga0247723_10637503 93Ga0135227_10166733 94Ga0315291_105747562 95Ga0315288_105399331 96Ga0315909_1000156032 97Ga0315909_1000758917 98Ga0315285_101951341 99Ga0315285_102616853 100Ga0315904_108327033 101Ga0315294_107715701 102Ga0315274_108332551 103Ga0315274_112409343 104Ga0315289_109578933 105Ga0315906_113678841 106Ga0315284_101165354 107Ga0315277_105692743 108Ga0334996_0187241_512_673 109Ga0334995_0347411_3_155 110Ga0335028_0237988_958_1107 111Ga0335027_0006568_2902_3063 112Ga0335030_0544772_567_722 113Ga0335031_0047768_2876_3037
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1RCM27_10176425 2JGI24219J26650_10149022 3JGI25912J50252_101397512 4Ga0151516_1045836 5Ga0181346_11469484
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1RCM27_10176425 2JGI24219J26650_10149022 3JGI25912J50252_101397512 4Ga0151516_1045836 5Ga0181346_11469484
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 86.79% β-sheet: 0.00% Coil/Unstructured: 13.21%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00535	Glycos_transf_2	7.96
PF09588	YqaJ	7.08
PF01391	Collagen	4.42
PF08042	PqqA	3.54
PF13489	Methyltransf_23	3.54
PF13641	Glyco_tranf_2_3	1.77
PF04404	ERF	1.77
PF09718	Tape_meas_lam_C	1.77
PF07120	DUF1376	0.88
PF02195	ParBc	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.88
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.88
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.88
COG3747	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.88
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	0.88
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	0.88
COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	Mobilome: prophages, transposons [X]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.58 %
Unclassified	root	N/A	4.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	11.50 %
Unclassified	root	N/A	4.42 %
Viruses	superkingdom	All Organisms → Viruses	84.07 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	11.50 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	84.07 %
Unclassified	root	N/A	4.42 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	84.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
Unclassified	root	N/A	4.42 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.65 %
Unclassified	root	N/A	4.42 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	84.07 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	84.07 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %
Unclassified	root	N/A	4.42 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	5.31 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	3.54 %
Unclassified	root	N/A	4.42 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	2.65 %

Name	Rank	Taxonomy	Distribution
Methylophilaceae phage P19250A	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Methylophilaceae phage P19250A	2.65 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	4.42 %
Unclassified	root	N/A	4.42 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	0.88 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3.54 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.88 %
Methylophilaceae phage P19250A	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Methylophilaceae phage P19250A	2.65 %
Unclassified	root	N/A	4.42 %
unclassified Siphoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae	1.77 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3.54 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.88 %
Methylophilaceae phage P19250A	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Methylophilaceae phage P19250A	2.65 %
Synechococcus phage S-CBS4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	1.77 %
Unclassified	root	N/A	4.42 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3.54 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001836\|RCM27_1017642	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2378	Open in IMG/M
3300001850\|RCM37_1025999	All Organisms → cellular organisms → Bacteria	2087	Open in IMG/M
3300002098\|JGI24219J26650_1014902	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1157	Open in IMG/M
3300003277\|JGI25908J49247_10001533	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7359	Open in IMG/M
3300003277\|JGI25908J49247_10004576	All Organisms → cellular organisms → Bacteria	4426	Open in IMG/M
3300003277\|JGI25908J49247_10052072	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1067	Open in IMG/M
3300003393\|JGI25909J50240_1002432	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4758	Open in IMG/M
3300003393\|JGI25909J50240_1007790	All Organisms → cellular organisms → Bacteria	2648	Open in IMG/M
3300003412\|JGI25912J50252_10139751	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300005580\|Ga0049083_10031268	All Organisms → cellular organisms → Bacteria → Proteobacteria	1900	Open in IMG/M

Showing 1 to 10 of 113 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.58%
Terrestrial	Environmental → Terrestrial	4.42%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	4.42%
Freshwater	Environmental → Aquatic → Freshwater	84.07%
Marine	Environmental → Aquatic → Marine	11.50%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	4.42%
Harbor	Environmental → Aquatic → Marine → Harbor	0.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.77%
Lake	Environmental → Aquatic → Freshwater → Lake	48.67%
Lentic	Environmental → Aquatic → Freshwater → Lentic	22.12%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.65%
River	Environmental → Aquatic → Freshwater → River	0.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.19%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.42%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.54%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.77%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	8.85%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	39.82%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	22.12%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.19%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.42%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.54%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.65%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Harbor → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	2.65%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.65%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.77%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	2.65%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	3.54%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.77%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.89%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.77%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.19%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.31%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.54%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.89%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.89%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	21.24%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	15.04%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.77%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	6.19%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	6.19%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.89%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	1.77%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.89%
Marine Harbor	Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor	0.89%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	1.77%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	8.85%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001836	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM27, ROCA_DNA191_0.2um_MCP-N_C_3a	Environmental	Open in IMG/M
3300001850	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a	Environmental	Open in IMG/M
3300002098	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental	Open in IMG/M
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M

Showing 1 to 10 of 92 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
RCM27_10176425	3300001836	Marine Plankton	MKHIDDINEHTKHLVDTVSGITVLGTIMKFLPAIAALLSIIWYCIRIYEWARSKFKK*
RCM37_10259994	3300001850	Marine Plankton	MKHIEDINEHTKHLVDTVSGITVLGTIMKFLPAIAALLSIIWYCIRIYEWARSKFKK*
JGI24219J26650_10149022	3300002098	Lentic	MDMQEHTKHVLDTVSGITAFGAIMKFLPAIAALLSIIWYCIRIYEWINSKIKK*
JGI25908J49247_100015332	3300003277	Freshwater Lake	MKMNMEEHTKHLLDTVSGITALGAVMKFLPAIAALLSIVWYCIRIYEWARLKIKK*
JGI25908J49247_100045761	3300003277	Freshwater Lake	MKMNMEENTKHLLDTVSGVTALGAVMKFLPAIAALLSIVWYCIRIYEWINTKIKK*
JGI25908J49247_100520722	3300003277	Freshwater Lake	MQEHTKHVLDTVSGITVLGTVMKFLPAIAALLSIVWYCIRIFEWARSKFKK*
JGI25909J50240_100243213	3300003393	Freshwater Lake	MKMNMEEHTKHLLDTVSGXTALGAVMKFLPAIAALLSIVWYCIRIYEWARLKIKK*
JGI25909J50240_10077902	3300003393	Freshwater Lake	MDMQEHTKHVLDTVSGITVLGTVMKFLPAIAALLSIVWYCIRIFEWARSKFKK*
JGI25912J50252_101397512	3300003412	Freshwater Lake	MKMNMEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIVWYCIRIYEW
Ga0049083_100312684	3300005580	Freshwater Lentic	MNMEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIIWYCIRIYEWARLKIKK*
Ga0049081_100132294	3300005581	Freshwater Lentic	MKMNMEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIVWYCIRIYEWARLKIKK*
Ga0049081_100278941	3300005581	Freshwater Lentic	MDMQEHTKHVLDTVSGITVLGTVMKFLPAIAALLSIIWYCIRIFEWARSKFKK*
Ga0049080_101764113	3300005582	Freshwater Lentic	ITMDMQEHTKHVLDTVSGITVLGTVMKFLPAIAALLSIIWYCIRIFEWARSKFKK*
Ga0079957_100116830	3300005805	Lake	MDMQEHTKHALDTVSGITVLGTVMKFLPAIAALLSIIWYCIRIFEWARSKFKK*
Ga0079957_10756554	3300005805	Lake	MDMQEHTKHVLDTASGVTALGAVMKFLPAIAAVLSIVWYCIRIYEWIKAKK*
Ga0070744_100543332	3300006484	Estuarine	MDMQEHTKHVLDTVSGLTAFGAIMKFLPAIAALLSIIWYCIRIYEWARSKFK*
Ga0070749_106617193	3300006802	Aqueous	MDMQEHTKHVLDTISGVTVLGTVMKFLPAIAALLSIVWYCIRIFEWARSKFKK*
Ga0075473_100757143	3300006875	Aqueous	MQEHTKHVLDTISGVTVLGTVMKFLPAIAALLSIVWYCIRIFEWARSKFKK*
Ga0102828_10498511	3300007559	Estuarine	MNMEEHTKHLLDTVSGVTAIGAVMKFLPAIAALLSIVWYCIR
Ga0102865_12538451	3300007639	Estuarine	MKMNMEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIIWYCIRIYEWARSKVKK*
Ga0105747_11288993	3300007974	Estuary Water	MDMQEHTKHVLDTVSGLTALGAIMKFLPAIAALLSIVWYCIRIYEWINSKIKK*
Ga0105747_11639511	3300007974	Estuary Water	MKMNMEEHTKHLLDTVSGVTAFGAVMKFLPAIAALLSIVWYCIRIYEWARSKVKK*
Ga0114347_10371065	3300008114	Freshwater, Plankton	MKHLDEVNEHTKHILDTVSGVTVLGTVMKFLPAIAALLSIIWYCIRIYEWARSKFKK*
Ga0114876_10401194	3300008448	Freshwater Lake	MDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAALLSIVWYCIRIFEWARSKFKK*
Ga0114880_11290144	3300008450	Freshwater Lake	MDMQEHTKHILDTVSGVTVLGTIMKFLPAIAALLSIVWYCIRIYEWARSKVKK*
Ga0105090_105557502	3300009075	Freshwater Sediment	MDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAAVLSIVWYCIRIYEWIKSKK*
Ga0114962_1000044232	3300009151	Freshwater Lake	MDMQEHTKHVLDTVSGLTAFGAIMNFLPAIAALLSIIWYCIRIYEWINSKINK*
Ga0114977_106749602	3300009158	Freshwater Lake	MNMEDHTKHLLDTVSGVTALGALMKFLPAIAAVLSIVWYCIRIYEWARSKIKK*
Ga0114978_100736264	3300009159	Freshwater Lake	MNMEEHTKHVLDTVSGITAFGAIMKFLPAIAALLSIVWYCIRIYEWINSKIKK*
Ga0114966_101293682	3300009161	Freshwater Lake	MEEHTKHLLDTVSGVTAIGTIMKFLPAIAALLSIVWYCIRIYEWARSKFK*
Ga0114975_100923604	3300009164	Freshwater Lake	MDMQEHTKHVLDTVSGLTAFGAIMKLLPAIAALLSIIWYCIRIYEWARSKIKK*
Ga0114975_103750881	3300009164	Freshwater Lake	MDMQEHTKHVLDTVSGITAFGAIMKFLPAIAALLSIVWYCIRIYEWINSKIKK*
Ga0105102_101377122	3300009165	Freshwater Sediment	MNMQEHTKHVLDTVSGVTVLGTVMKFLPAIAALLSIVWYCIRIYEWIKAKK*
Ga0105097_100023615	3300009169	Freshwater Sediment	MIMDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAALLSIVWYCIRIYEWARSKFKK*
Ga0114979_105114722	3300009180	Freshwater Lake	MDMQEHTKHVLDTVSGITAFGAIMKFLPAIAALLSIIWYCIRIYEWARSKFK*
Ga0114969_105633651	3300009181	Freshwater Lake	MNMEEHTKHLLDTVSGVTAIGTIMKFLPAIAALLSIVWYCIRIYEWARSKFK*
Ga0114959_104111374	3300009182	Freshwater Lake	MDMQEHTKHVLDTVSGLTAFGAIMNFLPAIAALLSIIWYCIRIYEWINSKI
Ga0114974_1000087111	3300009183	Freshwater Lake	MKMNMEDHTKHVLDTVSGVTALGALMKFLPAIAAVLSIIWYCIRIYEWLRSKLK*
Ga0114974_100085784	3300009183	Freshwater Lake	MDMQEHTKHVLDTVSGVTAFGAIMKFLPAIAAVLSIVWYCIRIYEWINSKIKK*
Ga0114974_100394914	3300009183	Freshwater Lake	MNMEDHTKHLLDTVSGVTALGALMKFLPAIAAVLSIVWYCIRIYEWARSKFKK*
Ga0114976_100792505	3300009184	Freshwater Lake	MDMQEHTKHVLDTVSGITAFGAIMKFLPAIAALLSIVWYCIRIYEWARSKIKK*
Ga0114976_102862502	3300009184	Freshwater Lake	MEDHTKHLLDTVSGVTALGALMKFLPAIAAVLSIVWYCIRIYEWARSKFKK*
Ga0114982_10237824	3300009419	Deep Subsurface	MDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAAMLSIVWYCIRIYEWARSKVKK*
Ga0114964_100719263	3300010157	Freshwater Lake	MDMQEHTKHVLDTVSGVTALGAIMKFLPAIAAVLSIVWYCIRIYEWVHSKLK*
Ga0133913_102045709	3300010885	Freshwater Lake	MDMQEHTKHVLDTVSGITALGAVMKFLPAIAALLSIVWYCIRIYEWIKSKFK*
Ga0151515_1008030	3300011114	Freshwater	MKMNMEDHTKHVLDTVSGITAFGAIMKFLPAIAALLSIVWYCIRIYEWVSSKFKK*
Ga0151516_1045836	3300011116	Freshwater	MIKHIQDINEHTKHVVDTISGITVLGTIAQILPAIAALLSIVWYSIRIYEHFKKKFNK*
Ga0153800_10391562	3300011995	Freshwater	MKMNMEEHTKHLLDTVSGVTAFGAVMKFLPAIAALLSIVWYCIRIYEWARLKIKK*
Ga0157136_10002647	3300012282	Freshwater	MNMEEHTKHLLDTVSGVTAFGAVMKFLPAIAALLSIVWYCIRIYEWARLKIKK*
Ga0157210_10273722	3300012665	Freshwater	MDMQEHTKHVLDTVSGVTAFGAVMKFLPAIAAVVSIVWYCIRIYEWARSKVKK*
Ga0177922_109061592	3300013372	Freshwater	MDMEEHTKHVLDTVSGLTALGAVMKFLPAIAALLSIVWYCIRIYEWINSKIKK*
Ga0181350_10126865	3300017716	Freshwater Lake	MNMEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIIWYCIRIYEWARLKIKK
Ga0181347_10259215	3300017722	Freshwater Lake	NMEENTKHLLDTVSGVTALGAVMKFLPAIAALLSIVWYCIRIYEWINTKIKK
Ga0181347_10701552	3300017722	Freshwater Lake	MDMQEHTKHVLDTVSGITVLGTVMKFLPAIAALLSIVWYCIRIF
Ga0181358_11359004	3300017774	Freshwater Lake	MNMEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIVWYCIRIYEWARLKIK
Ga0181346_10257845	3300017780	Freshwater Lake	MEEHTKHLLDTVSGVTALGAGMKFLPAIAAMLSIIRNCIRIYEWARLKIKK
Ga0181346_11469484	3300017780	Freshwater Lake	VLDTVSGVTAFGAIMNFLPAIAAVLSIVWYCIRIYEWARSKFKK
Ga0181359_10597303	3300019784	Freshwater Lake	MKMNMEEHTKHLLDTVSGITALGAVMKFLPAIAALLSIVWYCIRIYEWARLKIKK
Ga0211735_116373003	3300020162	Freshwater	MDMQEHTKHVLDTVSGITVLGTIMKFLPAIAALLSIVWYCIRIYEWIKSKSK
Ga0211731_100364074	3300020205	Freshwater	MNMQEHTKHVLDTVSGVTALGTVMKFLPAIAALLSIIWYCIRIYEWIKSKSK
Ga0194047_100544976	3300021354	Anoxic Zone Freshwater	KMNMEDHTKHVLDTVSGITAFGAIMKFLPAIAALLSIIWYCIRIYEWINSKIKK
Ga0194048_100792634	3300021519	Anoxic Zone Freshwater	MNMEEHTKHVLDTVSGITAFGAIMKFLPAIAALLSIIWYCIR
Ga0194048_101214113	3300021519	Anoxic Zone Freshwater	MDMQEHTKHVLDTVSGLTALGAIMKFLPAIAALLSIIWYCIRIYEWINSKIKK
Ga0222714_104916771	3300021961	Estuarine Water	MDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAALLSIVWYCIRIYEWARSKFKK
Ga0244775_102309681	3300024346	Estuarine	MEEHTKHLLDTVSGVTALGAVMKFLPAIAAVLSIIWYCIRIYEWARSKFKK
Ga0244775_108707382	3300024346	Estuarine	MDMQEHTKHVLDTVSGLTAFGAIMKFLPAIAALLSIIWYCIRIYEWARSKFK
Ga0208147_10345343	3300025635	Aqueous	MQEHTKHVLDTISGVTVLGTVMKFLPAIAALLSIVWYCIRIFEWARSKFKK
Ga0255080_10526023	3300027140	Freshwater	MDMQEHTKHVLDTVSGITAFGAIMKFLPAIAAVLSIVWYCIRIYEWARSKVKK
Ga0208974_10590043	3300027608	Freshwater Lentic	MQEHTKHVLDTVSGITVLGTVMKFLPAIAALLSIIWYCIRIFEWARSKFKK
Ga0208951_10662301	3300027621	Freshwater Lentic	MNMEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIIWYCIRIYEWARLK
Ga0208133_10594702	3300027631	Estuarine	MDMEEHTKHLLDTVSGVTALGAVMKFLPAIAAVLSIIWYCIRIYEWARSKFKK
Ga0208975_10952833	3300027659	Freshwater Lentic	MDMQEHTKHVLDTVSGITVLGTVMKFLPAIAALLSIIWYCIRIFEWARSKFKK
Ga0209392_12301822	3300027683	Freshwater Sediment	MQEHTKHVLDTVSGVTVLGTVMKFLPAIAALLSIVWYCIRIYEWIKAKK
Ga0209704_12549682	3300027693	Freshwater Sediment	MQEHTKHVLDTVSGVTVLGTVMKFLPAIAALLSIVWYCIRIYEWARSKAKK
Ga0209443_10294716	3300027707	Freshwater Lake	MNMEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIVWYCIRIYEWARLKIKK
Ga0209599_100121211	3300027710	Deep Subsurface	MDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAAILSIVWYCIR
Ga0209492_10006125	3300027721	Freshwater Sediment	MIMDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAALLSIVWYCIRIYEWARSKFKK
Ga0209087_11959422	3300027734	Freshwater Lake	MDMQEHTKHVLDTVSGITAFGAIMKFLPAIAALLSIVWYCIRIYEWARSKIKK
Ga0209355_12420271	3300027744	Freshwater Lake	MQEHTKHVLDTVSGITVLGTVMKFLPAIAALLSIVWYCIRIFEWARSKFKK
Ga0209084_100050236	3300027749	Freshwater Lake	MDMQEHTKHVLDTVSGLTAFGAIMNFLPAIAALLSIIWYCIRIYEWINSKINK
Ga0209596_14006781	3300027754	Freshwater Lake	MNMEEHTKHLLDTVSGVTAIGTIMKFLPAIAALLSIVWYCIRIYEWARSKFK
Ga0209296_100453016	3300027759	Freshwater Lake	MDMQEHTKHVLDTVSGLTAFGAIMKLLPAIAALLSIIWYCIRIYEWARSKIKK
Ga0209296_10113325	3300027759	Freshwater Lake	MDMQEHTKHVLDTVSGVTAFGAIMKFLPAIAAVLSIVWYCIRIYEWINSKIKK
Ga0209296_10718413	3300027759	Freshwater Lake	MNMEDHTKHLLDTVSGVTALGALMKFLPAIAAVLSIVWYCIRIYEWARSKFKK
Ga0209088_103501111	3300027763	Freshwater Lake	MDMQEHTKHVLDTVSGITAFGAIMKFLPAIAALLSIIWYCIRIYEWARSKFK
Ga0209500_104337352	3300027782	Freshwater Lake	MEEHTKHVLDTVSGITAFGAIMKFLPAIAALLSIVWYCIRIYEWINSKIKK
Ga0209353_102261802	3300027798	Freshwater Lake	MDMEEHTKHLLDTVSGVTALGAVMKFLPAIAAVLSIVWYCIRIYEWASSKFKK
Ga0209354_100071201	3300027808	Freshwater Lake	MEEHTKHLLDTVSGITALGAVMKFLPAIAALLSIVWYCIRIYEWARLKIKK
Ga0209079_103420152	3300027972	Freshwater Sediment	EHTKHVLDTVSGVTVLGTVMKFLPAIAALLSIVWYCIRIYEWARSKAKK
Ga0247723_100036229	3300028025	Deep Subsurface Sediment	MDMQEHTKHILDTVSGITVLGTVMKFLPAIAALLSIIWYCIRIFEWARSKFKK
Ga0247723_100050124	3300028025	Deep Subsurface Sediment	MDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAAMLSIVWYCIRIYEWARSKVKK
Ga0247723_10637503	3300028025	Deep Subsurface Sediment	MDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAALLSIIWYCIRIYEWARSKFKK
Ga0135227_10166733	3300029302	Marine Harbor	MKHLDEVSEHTKHALDTVSGITVLGTVMKFLPAIAALLSIVWYCIRIYEWARSKFKK
Ga0315291_105747562	3300031707	Sediment	MEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIVWYCIRIYEWIKSKK
Ga0315288_105399331	3300031772	Sediment	MNMEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIVWYCIRIYEWIKSKK
Ga0315909_1000156032	3300031857	Freshwater	MDMQEHTKHALDTVSGITVLGTVMKFLPAIAALLSIIWYCIRIFEWARSKFKK
Ga0315909_1000758917	3300031857	Freshwater	MKHLDEVNEHTKHILDTVSGVTVLGTVMKFLPAIAALLSIIWYCIRIYEWARSKFKK
Ga0315285_101951341	3300031885	Sediment	MKMNMEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIVWYCIR
Ga0315285_102616853	3300031885	Sediment	MNMEEHTKHLLDTVSGVTAIGTIMKFLPAIAALLSIVWYCIRIYEWARSKFKK
Ga0315904_108327033	3300031951	Freshwater	MQEHTKHALDTVSGITVLGTVMKFLPAIAALLSIIWYLIRIFEWARSKFKK
Ga0315294_107715701	3300031952	Sediment	MKMNMEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIVWYCIRIYEWIKSKSK
Ga0315274_108332551	3300031999	Sediment	MEEHTKHLLDTVSGVTAFGAVMKFLPAIAALLSIVWYCIRIYE
Ga0315274_112409343	3300031999	Sediment	VKRNNMNMEEHTKHLLDTVSGVTAFGAVMKFLPAIAALLSIVWYCIRIYEWIKSKK
Ga0315289_109578933	3300032046	Sediment	MEEHTKHLLDTVSGVTAIGTIMKFLPAIAALLSIVWYCIRIYEWARLKFKK
Ga0315906_113678841	3300032050	Freshwater	KHLDEVNEHTKHILDTVSGVTVLGTVMKFLPAIAALLSIIWYCIRIYEWARSKFKK
Ga0315284_101165354	3300032053	Sediment	MNMEEHTKHLLDTVSGVTAIGAVMKFLPAIAALLSIVWYCIRIYEWARSKFKK
Ga0315277_105692743	3300032118	Sediment	MEEHTKHLLDTVSGVTALGAVMKFLPAIAALLSIVWYCIRIYEWARLKIKK
Ga0334996_0187241_512_673	3300033994	Freshwater	MDMQEHTKHVLDTVSGVTVLGTVMKFLPAIAAVLSIVWYCIRIYEWARSKAKK
Ga0334995_0347411_3_155	3300034062	Freshwater	MNMQEHTKHVLDTVSGVTAFGAIMKFLPAIAAVLSIVWYCIRIYEWARSKV
Ga0335028_0237988_958_1107	3300034071	Freshwater	ENTKHVLDTVSGVTVLGTVMKFLPAIAAILSIVWYCIRIYEWARSKYKK
Ga0335027_0006568_2902_3063	3300034101	Freshwater	MDMQEHTKHILDTVSGITVLGTVMKFLPAIAALLSIVWYCIRIFEWARSKFKK
Ga0335030_0544772_567_722	3300034103	Freshwater	MQEHTKHVLDTVSGVTAFGAIMKFLPAIAAVLSIVWYCIRIYEWARSKVKK
Ga0335031_0047768_2876_3037	3300034104	Freshwater	MDMQEHTKHVLDAVSGVTVLGTVMKFLPAIAAVLSIVWYCIRIFEWARSKFKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F082685

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences