Scaffold Ga0247723_1000376

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000376
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30917
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (18.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F024318	Metagenome	206	Y
F034898	Metagenome / Metatranscriptome	173	Y
F055561	Metagenome	138	N
F069854	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100037611	F034898	N/A	MTKEEIIQELQFRATQKYLIYLALQEIMLDNYEDATFLKDYDHDLTVKHKNIINSLKRNATKAFRFLEGYDEGEATIKQFHDFVKLFERIHESIDWGGPVYTDCLTAVEQIINNYAKIHGSGSGDNA
Ga0247723_100037613	F008073	N/A	MRKTILKHLQKMEFVCGLKQFKEYKKEDANELIECLHDLFKKFGWMTEERVDYILQAGMRGQYGDFYHVNEKTVNGWINQYYMHHQSQIVMEVQNASNKEKEPSAEEIAYWIEIGKNIFRENYQHAKDTGFCRDIADWGINWFNKFQEKGILKPWAYNVEEIEQEVRKELRLTKHWVEESTVGAKSKNRIWKLFILESIRENRELDKLI
Ga0247723_100037618	F005529	N/A	MAKGLPKSKTDYSLEIRYRLRDGQWSAWSNKGKGTFESIEIVQRQIRLLASSYQGREKEVKFEWNGWLCDFSGHPTGEVISLK
Ga0247723_100037631	F069854	N/A	MRNIKKFIRKAYWTALNNTITYKGSPVPCYDTFAPDNAVFPYILIGNQTQADDKDNQEYNYVTTIVLDVVTAAIAPYGRLDADNIADSILQLVCLYPENYLALEVGKIVTAKLIQQTSLSSITDTNVVHREILTIENWIDG
Ga0247723_100037635	F055561	N/A	MSFAEYQSIAYGHQIRESKQENLFRSLWVQLNNVNVTRKSDLIRKPEKYWKIPLLDAKPVKIPTEAEKAKAYEIGLQWQNLKFEEEANFDTITKTIK
Ga0247723_100037640	F014605	N/A	MKVNLAVAVTDIEGNEIPNERGEQMLLSKLVGNALFTAEDKDDPIRVYELAKKIYYSEGEIEMTKSDADLIKEKVKAKGFTVLILAPLYEALSEK
Ga0247723_100037647	F001775	N/A	MRQLLDDERIRIATISFLIGVVLTFVLFPRPETEQVYKFTTRVKTDTIYSRVVDTVYISKNKIKTQVLRDTILIDFKPQISQFNASFPFEHGSTSISGEVLGEVLKMTATNEFNLPVVNNTITNTETKTIIQKPKGIYLGGLVSSKMELGAKVAYLDNKYLFEYQYQPFQKVHQIGISKKLF
Ga0247723_10003765	F024318	N/A	MKYLGKEIARPGDLAPKGVRSTYQTEKLPFNETFERLWQLTNSKK
Ga0247723_100037650	F008081	N/A	MEESEILNPFGYGKASRVIDENRKPADWWHEYFDFNEVFAENEFYILFSDGLLVKKGRSKFRTSQYIKGEKFTSFLQVYEKV