NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000370

Scaffold Ga0247723_1000370


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000370 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31153
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (87.30%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F018164Metagenome / Metatranscriptome236Y
F018698Metagenome / Metatranscriptome233Y
F036663Metagenome / Metatranscriptome169N
F060854Metagenome / Metatranscriptome132N
F070030Metagenome / Metatranscriptome123Y
F095175Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100037015F070030AGGAGGMIIQTSVTLVCEYCNAEIERRTNLEAREALAEHQNYVQCLKGY
Ga0247723_100037016F060854GGAMPKPRPTEIKLVANLLDPDNTDSESAADLAVEIIEALDESRMKRDNYILVAQLARWAPVQAWGEFSTKLQVEKFMKNLSAVDSEGGRAVIVHLEQPEKLLERIGEIKK
Ga0247723_100037024F095175AGGMTTIIGMQQDNGCMIVADSRTTAGNRPYSHPTVTKINKRGKWLIAGAGDVQPCDVIQHIWKPPVIPSNTKDEYHFMITTVAPSIRECIKESGYLPDKDDADAGFELLLAVNGTIYQVDDSYSVYLRDDGLYGIGSGSQWALGAIAAGATWKQAMQLAAKNDVYTAPPFIVHRQEKK
Ga0247723_100037030F001515AGGAMAVGNSSFDLDLSYGQAGENLVEELLTQGRTVEVKRDRKWHSTGNVYVEVECWYMRTESWEPSGVMVTKAEYWAFVLEKGVLMVPTDHVLYAIKNFGREITCEIPPNRSKGYLITVDDLLTAMRNLKDG
Ga0247723_100037036F036663AGCAGGMEQNKLIPLVSPGERSELVEKVRLALNVAGGDVLDAPLAEMLKGLQHRLSIPAVGCINIATLDALAVAPPEW
Ga0247723_100037053F018164AGGMAKIFRGPTMKIKLGLTNDLWFVSYPWGKTVVKDNGTWKTIVSPQDSSLADYDKVLRGGYDNPITDAEAAELTAAGYGDYIVEL
Ga0247723_100037059F018698GGAGMAENYEYDIEDDEDYVGTDLVKKLRKQIDGLQKQLKEKDSLIEEFTTYSHESSVGEILESFGLNAKIAQFIPSEVEADPDAVAEWLNEYGDAFGIEAVEEGGEASPDAQAHEQMANFDDGDIDPFIGQDLQSRINNVGSKEELMKLIQG

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