Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1000370 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 31153 |
Total Scaffold Genes | 63 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 55 (87.30%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001515 | Metagenome / Metatranscriptome | 679 | Y |
F018164 | Metagenome / Metatranscriptome | 236 | Y |
F018698 | Metagenome / Metatranscriptome | 233 | Y |
F036663 | Metagenome / Metatranscriptome | 169 | N |
F060854 | Metagenome / Metatranscriptome | 132 | N |
F070030 | Metagenome / Metatranscriptome | 123 | Y |
F095175 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100037015 | F070030 | AGGAGG | MIIQTSVTLVCEYCNAEIERRTNLEAREALAEHQNYVQCLKGY |
Ga0247723_100037016 | F060854 | GGA | MPKPRPTEIKLVANLLDPDNTDSESAADLAVEIIEALDESRMKRDNYILVAQLARWAPVQAWGEFSTKLQVEKFMKNLSAVDSEGGRAVIVHLEQPEKLLERIGEIKK |
Ga0247723_100037024 | F095175 | AGG | MTTIIGMQQDNGCMIVADSRTTAGNRPYSHPTVTKINKRGKWLIAGAGDVQPCDVIQHIWKPPVIPSNTKDEYHFMITTVAPSIRECIKESGYLPDKDDADAGFELLLAVNGTIYQVDDSYSVYLRDDGLYGIGSGSQWALGAIAAGATWKQAMQLAAKNDVYTAPPFIVHRQEKK |
Ga0247723_100037030 | F001515 | AGGA | MAVGNSSFDLDLSYGQAGENLVEELLTQGRTVEVKRDRKWHSTGNVYVEVECWYMRTESWEPSGVMVTKAEYWAFVLEKGVLMVPTDHVLYAIKNFGREITCEIPPNRSKGYLITVDDLLTAMRNLKDG |
Ga0247723_100037036 | F036663 | AGCAGG | MEQNKLIPLVSPGERSELVEKVRLALNVAGGDVLDAPLAEMLKGLQHRLSIPAVGCINIATLDALAVAPPEW |
Ga0247723_100037053 | F018164 | AGG | MAKIFRGPTMKIKLGLTNDLWFVSYPWGKTVVKDNGTWKTIVSPQDSSLADYDKVLRGGYDNPITDAEAAELTAAGYGDYIVEL |
Ga0247723_100037059 | F018698 | GGAG | MAENYEYDIEDDEDYVGTDLVKKLRKQIDGLQKQLKEKDSLIEEFTTYSHESSVGEILESFGLNAKIAQFIPSEVEADPDAVAEWLNEYGDAFGIEAVEEGGEASPDAQAHEQMANFDDGDIDPFIGQDLQSRINNVGSKEELMKLIQG |
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