Scaffold Ga0247723_1000370

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000370
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31153
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (87.30%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F018164	Metagenome / Metatranscriptome	236	Y
F018698	Metagenome / Metatranscriptome	233	Y
F036663	Metagenome / Metatranscriptome	169	N
F060854	Metagenome / Metatranscriptome	132	N
F070030	Metagenome / Metatranscriptome	123	Y
F095175	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100037015	F070030	AGGAGG	MIIQTSVTLVCEYCNAEIERRTNLEAREALAEHQNYVQCLKGY
Ga0247723_100037016	F060854	GGA	MPKPRPTEIKLVANLLDPDNTDSESAADLAVEIIEALDESRMKRDNYILVAQLARWAPVQAWGEFSTKLQVEKFMKNLSAVDSEGGRAVIVHLEQPEKLLERIGEIKK
Ga0247723_100037024	F095175	AGG	MTTIIGMQQDNGCMIVADSRTTAGNRPYSHPTVTKINKRGKWLIAGAGDVQPCDVIQHIWKPPVIPSNTKDEYHFMITTVAPSIRECIKESGYLPDKDDADAGFELLLAVNGTIYQVDDSYSVYLRDDGLYGIGSGSQWALGAIAAGATWKQAMQLAAKNDVYTAPPFIVHRQEKK
Ga0247723_100037030	F001515	AGGA	MAVGNSSFDLDLSYGQAGENLVEELLTQGRTVEVKRDRKWHSTGNVYVEVECWYMRTESWEPSGVMVTKAEYWAFVLEKGVLMVPTDHVLYAIKNFGREITCEIPPNRSKGYLITVDDLLTAMRNLKDG
Ga0247723_100037036	F036663	AGCAGG	MEQNKLIPLVSPGERSELVEKVRLALNVAGGDVLDAPLAEMLKGLQHRLSIPAVGCINIATLDALAVAPPEW
Ga0247723_100037053	F018164	AGG	MAKIFRGPTMKIKLGLTNDLWFVSYPWGKTVVKDNGTWKTIVSPQDSSLADYDKVLRGGYDNPITDAEAAELTAAGYGDYIVEL
Ga0247723_100037059	F018698	GGAG	MAENYEYDIEDDEDYVGTDLVKKLRKQIDGLQKQLKEKDSLIEEFTTYSHESSVGEILESFGLNAKIAQFIPSEVEADPDAVAEWLNEYGDAFGIEAVEEGGEASPDAQAHEQMANFDDGDIDPFIGQDLQSRINNVGSKEELMKLIQG