Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1000341 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32056 |
Total Scaffold Genes | 56 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (17.86%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
Associated Families | 10 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001775 | Metagenome / Metatranscriptome | 636 | Y |
F005529 | Metagenome / Metatranscriptome | 397 | Y |
F008073 | Metagenome | 339 | Y |
F008081 | Metagenome / Metatranscriptome | 339 | Y |
F020344 | Metagenome / Metatranscriptome | 224 | N |
F024318 | Metagenome | 206 | Y |
F029443 | Metagenome / Metatranscriptome | 188 | Y |
F042328 | Metagenome | 158 | Y |
F047062 | Metagenome | 150 | Y |
F065775 | Metagenome | 127 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247723_10003411 | F005529 | N/A | MPRMLPKSPLDYSLEIRYRLSSGEWSAWMNKGKGSFQNIEIVQRQIRLLAASYYGRQKEIRFEWNGWLCDFAGLPTGEVISLK |
Ga0247723_100034123 | F020344 | N/A | MIAIPQGTNTSIYITLTDKRETSSNVYIFRFNHEVTNEEVILTLTDTSTFKDRVSKFAITSANFNNRTIGFWRYNVTQSGSGSEIIATGKMQLTAPNLSTAGVIRYNGYNGDYKTYTTT |
Ga0247723_100034126 | F029443 | N/A | MTLANLVAKLKAIQEAHPMIRTFGEGDIYDYTDNGGEIIYPVFWTVVRPSQYANTTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNTYSFNTPPQASVEFFQERFDDFAAGVSIDIEITAPIPLNLCQVPTN |
Ga0247723_100034133 | F001775 | GAG | MEFSTDNQKIRIAILAFIAGVILAFIVFPRPEQETVYKFETKVESDTIYTRVVDTIYVPKTKIKTEVLRDTVLIDFKPRISLFKASIPSEYGSTHVSGEVLGEVLKMTATNDFKIPVVTNTITETKTETIIKKPKGIYVGASINSLSDPGAKVSYLDNKYLFQYGYQPVTKIHTLGISKKLF |
Ga0247723_100034137 | F008081 | N/A | MEESEILNPFGYGKASRVIDENRKPQEWWIEYTSINQVTAENEFYILFEDGCLVKKGRSKFKSSQYLKGDRFKSFRQHHESAG |
Ga0247723_100034139 | F047062 | N/A | MNYETENFHDQEITFTYEGEDYLWIGDYTIEHTGEDESEFAPAYGEMEITIEYTRSLSSYEHGYEVIPTRSMLMELELEIERNY |
Ga0247723_100034145 | F024318 | GGA | MKPYLYLGKFIQRPGDLAPKGVRSTYQTEKLPFNETFERIWQIVNTKA |
Ga0247723_10003415 | F042328 | N/A | METKPKIRLGNGKKRSASWLTAAICISDAEAHAYTYNGKKYVNLNVNIYDAPNEYGKDVAITLNDYKKEENLNPEVNKMPTAPVTYEAEDYDLPF |
Ga0247723_100034151 | F008073 | N/A | MKGIILKHLQKMEFVCGLKQFKEYSQEDGVELLNCLNKLFSSYGWMNESRVDYILHAGMRGQYGDFYHVNEKNVSVWINQYYAHHQSQIVQEVQAMNRVDREPTEEEIAQWIEIGKQIFRDNYQSAKESGFCKDLAEWGGNWFNKFQEKGILKPWEYPVEDIEKDVRRELRISTRYIDEVTVGAKSKNKIWKLFILESIKENRNLDKLI |
Ga0247723_10003417 | F065775 | N/A | MSNFQLNFNSEKKVISITLDNEEGIFDLAYLFKKLLDDAGIPNKLEEKDITPVEALQVANEKLD |
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