NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000341

Scaffold Ga0247723_1000341


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000341 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32056
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (17.86%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F005529Metagenome / Metatranscriptome397Y
F008073Metagenome339Y
F008081Metagenome / Metatranscriptome339Y
F020344Metagenome / Metatranscriptome224N
F024318Metagenome206Y
F029443Metagenome / Metatranscriptome188Y
F042328Metagenome158Y
F047062Metagenome150Y
F065775Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10003411F005529N/AMPRMLPKSPLDYSLEIRYRLSSGEWSAWMNKGKGSFQNIEIVQRQIRLLAASYYGRQKEIRFEWNGWLCDFAGLPTGEVISLK
Ga0247723_100034123F020344N/AMIAIPQGTNTSIYITLTDKRETSSNVYIFRFNHEVTNEEVILTLTDTSTFKDRVSKFAITSANFNNRTIGFWRYNVTQSGSGSEIIATGKMQLTAPNLSTAGVIRYNGYNGDYKTYTTT
Ga0247723_100034126F029443N/AMTLANLVAKLKAIQEAHPMIRTFGEGDIYDYTDNGGEIIYPVFWTVVRPSQYANTTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNTYSFNTPPQASVEFFQERFDDFAAGVSIDIEITAPIPLNLCQVPTN
Ga0247723_100034133F001775GAGMEFSTDNQKIRIAILAFIAGVILAFIVFPRPEQETVYKFETKVESDTIYTRVVDTIYVPKTKIKTEVLRDTVLIDFKPRISLFKASIPSEYGSTHVSGEVLGEVLKMTATNDFKIPVVTNTITETKTETIIKKPKGIYVGASINSLSDPGAKVSYLDNKYLFQYGYQPVTKIHTLGISKKLF
Ga0247723_100034137F008081N/AMEESEILNPFGYGKASRVIDENRKPQEWWIEYTSINQVTAENEFYILFEDGCLVKKGRSKFKSSQYLKGDRFKSFRQHHESAG
Ga0247723_100034139F047062N/AMNYETENFHDQEITFTYEGEDYLWIGDYTIEHTGEDESEFAPAYGEMEITIEYTRSLSSYEHGYEVIPTRSMLMELELEIERNY
Ga0247723_100034145F024318GGAMKPYLYLGKFIQRPGDLAPKGVRSTYQTEKLPFNETFERIWQIVNTKA
Ga0247723_10003415F042328N/AMETKPKIRLGNGKKRSASWLTAAICISDAEAHAYTYNGKKYVNLNVNIYDAPNEYGKDVAITLNDYKKEENLNPEVNKMPTAPVTYEAEDYDLPF
Ga0247723_100034151F008073N/AMKGIILKHLQKMEFVCGLKQFKEYSQEDGVELLNCLNKLFSSYGWMNESRVDYILHAGMRGQYGDFYHVNEKNVSVWINQYYAHHQSQIVQEVQAMNRVDREPTEEEIAQWIEIGKQIFRDNYQSAKESGFCKDLAEWGGNWFNKFQEKGILKPWEYPVEDIEKDVRRELRISTRYIDEVTVGAKSKNKIWKLFILESIKENRNLDKLI
Ga0247723_10003417F065775N/AMSNFQLNFNSEKKVISITLDNEEGIFDLAYLFKKLLDDAGIPNKLEEKDITPVEALQVANEKLD

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