Scaffold Ga0247723_1000341

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000341
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32056
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (17.86%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F020344	Metagenome / Metatranscriptome	224	N
F024318	Metagenome	206	Y
F029443	Metagenome / Metatranscriptome	188	Y
F042328	Metagenome	158	Y
F047062	Metagenome	150	Y
F065775	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10003411	F005529	N/A	MPRMLPKSPLDYSLEIRYRLSSGEWSAWMNKGKGSFQNIEIVQRQIRLLAASYYGRQKEIRFEWNGWLCDFAGLPTGEVISLK
Ga0247723_100034123	F020344	N/A	MIAIPQGTNTSIYITLTDKRETSSNVYIFRFNHEVTNEEVILTLTDTSTFKDRVSKFAITSANFNNRTIGFWRYNVTQSGSGSEIIATGKMQLTAPNLSTAGVIRYNGYNGDYKTYTTT
Ga0247723_100034126	F029443	N/A	MTLANLVAKLKAIQEAHPMIRTFGEGDIYDYTDNGGEIIYPVFWTVVRPSQYANTTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNTYSFNTPPQASVEFFQERFDDFAAGVSIDIEITAPIPLNLCQVPTN
Ga0247723_100034133	F001775	GAG	MEFSTDNQKIRIAILAFIAGVILAFIVFPRPEQETVYKFETKVESDTIYTRVVDTIYVPKTKIKTEVLRDTVLIDFKPRISLFKASIPSEYGSTHVSGEVLGEVLKMTATNDFKIPVVTNTITETKTETIIKKPKGIYVGASINSLSDPGAKVSYLDNKYLFQYGYQPVTKIHTLGISKKLF
Ga0247723_100034137	F008081	N/A	MEESEILNPFGYGKASRVIDENRKPQEWWIEYTSINQVTAENEFYILFEDGCLVKKGRSKFKSSQYLKGDRFKSFRQHHESAG
Ga0247723_100034139	F047062	N/A	MNYETENFHDQEITFTYEGEDYLWIGDYTIEHTGEDESEFAPAYGEMEITIEYTRSLSSYEHGYEVIPTRSMLMELELEIERNY
Ga0247723_100034145	F024318	GGA	MKPYLYLGKFIQRPGDLAPKGVRSTYQTEKLPFNETFERIWQIVNTKA
Ga0247723_10003415	F042328	N/A	METKPKIRLGNGKKRSASWLTAAICISDAEAHAYTYNGKKYVNLNVNIYDAPNEYGKDVAITLNDYKKEENLNPEVNKMPTAPVTYEAEDYDLPF
Ga0247723_100034151	F008073	N/A	MKGIILKHLQKMEFVCGLKQFKEYSQEDGVELLNCLNKLFSSYGWMNESRVDYILHAGMRGQYGDFYHVNEKNVSVWINQYYAHHQSQIVQEVQAMNRVDREPTEEEIAQWIEIGKQIFRDNYQSAKESGFCKDLAEWGGNWFNKFQEKGILKPWEYPVEDIEKDVRRELRISTRYIDEVTVGAKSKNKIWKLFILESIKENRNLDKLI
Ga0247723_10003417	F065775	N/A	MSNFQLNFNSEKKVISITLDNEEGIFDLAYLFKKLLDDAGIPNKLEEKDITPVEALQVANEKLD