NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000283

Scaffold Ga0247723_1000283


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000283 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33974
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (75.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006985Metagenome / Metatranscriptome360Y
F011142Metagenome / Metatranscriptome294Y
F013741Metagenome / Metatranscriptome268Y
F043286Metagenome156Y
F047566Metagenome149Y
F058788Metagenome / Metatranscriptome134Y
F068428Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10002831F006985AGGMIREVCSCGAEFETDDREAITLVKSWRKTHKHSEKPQQTDTGHGSILSSNEVALGFQAIYNPLDDDLE
Ga0247723_100028318F011142AGAAGMAVVKVSGKVSKIFGASNQGLSLIESYKSATGEDYTRTWSVWFAVSHNLVVDQEVTVFGQLSAKIEDFEDKTGKPGRKVKLDINNAQVDAPKVAEPVLSAPF
Ga0247723_100028319F043286AGGCGGLQDNQVECRRCGFVWTVNAEKRGRKDLLCASCRVKPAVMIQYGKLRCIPFQGALDLELNPVDDEGVLVHPGERICGHTDCVNPAHIASDIL
Ga0247723_100028335F047566AGGAMKTVLISRLKAVWEVVSELLWRGFGIFLFILGGSAGVGAALTGSWFDGVIIAWGTLMLGVLAALGYAIATTGKATRADVAKGASDAIQKAKEKTEDKK
Ga0247723_100028340F013741AGGAMHEQPKPTNQTLLLQIVRDIEILKANSIQILDASRDHENRIRELEKQINRNAWMPALITAVITSILILAVTKGMGF
Ga0247723_10002835F068428GAGMLEDLQIPVRITSCRVRTLRDELSDKDSAILEAAVMNPEWACKTLSNELLKRDIKISDTAIKHHREKRCSCWKI
Ga0247723_100028356F058788N/AMNLLATILQASGIAVISVGVSLIFLPAGLVVAGLGVLLFGLALDKGGK
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