Scaffold Ga0247723_1000190

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000190
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39572
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (90.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016149	Metagenome / Metatranscriptome	249	Y
F032583	Metagenome	179	Y
F051711	Metagenome	143	Y
F064523	Metagenome / Metatranscriptome	128	Y
F083915	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100019011	F051711	AGGAG	MAYINQPIDLQRIFKDLDNRLNKLETAVRFTFPNVTVDPTYYRIGDAWLNITDNEAKIVDSTGTVRVINWT
Ga0247723_100019043	F083915	AGGAGG	VVDDLLSASEVCERLNITINNLRQIQHRKSLVWVQKTGRNVYYAKQDVENYLTKRQERNQ
Ga0247723_100019057	F016149	AGGAGG	MAKWVAPDRGVKETVIGGQSYFSDRQGIYNVENKAHQKAMKAEGFFEAALNPYSAQDNMRGFNCVECGFGGWFRKCGRCGHESQDIPRDGE
Ga0247723_100019062	F032583	AGGAGG	MSKEVKLPSGATVVLKDPSTLRVKDRKNVMRTADNAIGGDLTKALALGDALVAMLVESWSFDLIPPSIKMESLDELTMADYDALVEHTKDAQKYLFPNLAETPETEKDPKAPGGNSNA
Ga0247723_100019063	F064523	N/A	MAERFGWTPQQVDDLPAQTADWLIAIARTVDEVKTEGLRE