NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000181

Scaffold Ga0247723_1000181


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000181 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40218
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (83.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F033006Metagenome / Metatranscriptome178Y
F034574Metagenome / Metatranscriptome174Y
F058945Metagenome / Metatranscriptome134N
F072283Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100018122F001531GGAMNWDEVKKWDYIVDTVASEYNRKFNMVEVADLRQALWLWFAEHPNKLKEWEAKGERDAKNLIYKSLRNQAIDYCQRWKAKSVGYDVSDLFYYTSEIVETILPAVLRQEFGVSHKLNLGGPGRPSAPSEGGNLVVLMLEVDYAFWKLNKEDRRILFMRHAESLDFKEIANVLSLGSEDTSRMRHKRAIGKLVRRLGGYKPYNDKDFVESEESEEEESPLQGEQ
Ga0247723_10001813F034574AGGAGMKITYTIWQGSLMKGRLTAKNMKEIVTLIGELNEGNPTLKFEYLVHEIEK
Ga0247723_100018157F058945AGGGGGMECDHKSKVLEWGYELKDGQMNQYVSLYGCTECDATSPKPFIGKEEFFTIDHSNCQIDPCFGCKAKGLQLSTGDANSQSFMSKKKYNKEMDAYKEARRQGIQPGGTTMKKIEAAHKASENLGKPYNGNSMISAEKITPKTATIMKEIGQI
Ga0247723_100018164F033006N/AVKWVENSFFDHLDKFANSLGYDNFGVALSLSMVPWESTNDRDRFILAITEDEVQGGSLSTFKPGTVQ
Ga0247723_10001817F072283AGGAGMNTMQDLINAIKLILPNALVIDTDEGILIETNLELGLGGLLQPMETEGD
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