NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000178

Scaffold Ga0247723_1000178


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000178 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40473
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (75.81%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003784Metagenome468Y
F005909Metagenome / Metatranscriptome386Y
F014237Metagenome264Y
F035280Metagenome172Y
F037608Metagenome / Metatranscriptome167Y
F053785Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100017812F003784GGAMGADGTDFAYYGLSHLGNQLRERDASNMSNSNPLVDHLAVVGYRAGGVSTEDLTSFIESFASLRANRVKGVGHDQYSHAQGQKFESFTTADTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD
Ga0247723_100017818F035280GAGMSEKRIAGHWWQYGRKAGFGIGFDVSKYSWYVDIGFWYIGKEF
Ga0247723_100017829F014237AGGAMDTLKNVMMRILAVIAAEALGVIGAGSLVGIEVWQAAVLAGALGAARVLEALARFYLADGNLSAEEINAAFAKVDKKASE
Ga0247723_100017849F005909AGGAGMENYPEMEMESEEYITKYPTPDKQYAGAMKYSTYESLQTGAMGKAAK
Ga0247723_100017858F053785AGGMDKHRIRRPIRSSDFVVVLAETAYNLSQVAAGFFESLYELSVYHSNHKTETNQAWEEMAQDLETLEEDR
Ga0247723_10001787F037608GGAGMGEVISFHPPKSDLILLYEVVDESGNAEWGGNNEREALAWIASSPTAARILVSGWESDDDDAHLVGQPLDITTMVKAASL
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