Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1000089 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	54418
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (90.41%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

54418

Total Scaffold Genes

73 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

66 (90.41%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006622	Metagenome	368	Y
F028744	Metagenome	190	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F055432	Metagenome	138	N
F056339	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100008929	F006622	AGG	VNEYQKQFDLFLKVFVRLCIAWWVLGLLRFLPDELAKKIVDKLLGMIGL
Ga0247723_100008966	F028744	N/A	MHEFLYECDELGLSLKCFFEYEPAEVGSVEPLSGLKLEPDYPEVWTLISVFLPNSNVDLSGVLHPDVIFRIEQDAPIYFEEMRNVV
Ga0247723_100008967	F031377	AGGA	MITNAHEFTSVSGTNGRVTPFNTGKVQIGLLYQPKPPEMTSSEELVQAALMGWSSIHRPVPLWPVTIGSLIVGFLIILTVG
Ga0247723_100008968	F039000	AGGA	MTKKPDDTDKDIGQIMDNAQTLLNFCGNTFAKPSEAWYACLVSSAILTAELDVPVEVFLEGFEHAYKDAMKAKAKTGPSYDH
Ga0247723_100008972	F055432	AGAAG	MKNLSFDEVAFLDVYQHAVAVASRADVVRFLSADPDERSSREFCDSMDDVYSSIADAYEVWFCALKHARTNKGMTVRTLSAALANLPQDLPVLIWDAGTRLGLAHVDDSFIDDEDYPRVEFNTDRDD
Ga0247723_100008973	F056339	AGGA	MPIYKYDVCFPNSQSVIRSFPSLVRARDFMRVMSADDLPFLVMPWDENSSPLIVRRVKTPRKYHTQKAVKVDILGPSSTERIEKC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1000089

Overview

Ecosystem & Geography

Associated Families

Sequences