Scaffold Ga0247723_1000072

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000072
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58854
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 89 (83.18%)
• Novel Protein Genes: 21
• Novel Protein Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Associated Families: 21

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004793	Metagenome / Metatranscriptome	423	Y
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F019308	Metagenome	230	N
F020531	Metagenome	223	Y
F024770	Metagenome / Metatranscriptome	204	Y
F025725	Metagenome / Metatranscriptome	200	Y
F027488	Metagenome	194	N
F029091	Metagenome / Metatranscriptome	189	Y
F035280	Metagenome	172	Y
F036203	Metagenome	170	Y
F041730	Metagenome	159	Y
F042308	Metagenome / Metatranscriptome	158	Y
F042324	Metagenome / Metatranscriptome	158	Y
F043922	Metagenome	155	Y
F044450	Metagenome / Metatranscriptome	154	N
F054812	Metagenome / Metatranscriptome	139	Y
F057363	Metagenome / Metatranscriptome	136	Y
F058789	Metagenome / Metatranscriptome	134	N
F102814	Metagenome	101	N
F105048	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_1000072100	F027488	GGAGG	VSIRWITKVWSDSPYDGTRLLIHLALADISHDDGRFFASQSNLATKGRCSVEYVRKVINEMIADGHLKIITKGNSRGNATVYQLIWKKLPNSVGEEQSLGEVELPNSDTPNSPTMEPQLPNATPYHPSYTSVLSTTKSDETAIAVVALSEAVARKWWEKQRVKPLGKSAWHSLLAICQAAEKRGYTADQIEQALDYIGTVPSMRQMDLVLRGVGVKTKHEQSAIRAIDLAEKFRNESL
Ga0247723_1000072101	F020531	AGGAG	MNNQQLEQSTWQKSSAMSLSDLAILLGFIGIYDLRIQVDELKVRAWAESLDSDVPLDEAKKIVSYHYSNHDTAITPSHINREWRRRIADARERERSRLMSLEYQELEKKKASPEFVAQIKKELLDKLNRGTNAPLEEDNGTVAPNS
Ga0247723_100007212	F029091	GAGG	MAQKAVKKIGQYRLYKVEGYGIYEIYYGTKATGVHVENIANKENFEWAVGEIKQGVQQAVREGYGIGVSN
Ga0247723_100007219	F054812	GAGG	MNEQEVNQKFDALVQPKIINQVVKQKREPAKFPELRYLWGVTLLGSFVLVVITTLITSIIEAL
Ga0247723_100007225	F004793	GAGG	MNIIEAKQRIGNQPTWALKNMVKALKMLPALNTAEDELNLEAAKVILKERNKK
Ga0247723_100007229	F102814	AGGA	MAGTKPRDSQRQRLYDAQRLAGFYYRGEVMTIKEAQKFVNQVLSHQKTKKLHEQYRFQFSTYPSKIIVEAGSGNHATMRTRNWELVRLIRLTKAGRNKFIILHEIAHHITWGRESHGAEFADVLLQFTTRYLGKPDADKLANAFHEKRVKVMTKSKKARVPRKREIESARLVA
Ga0247723_100007235	F105048	AGGTGG	MNLLSRLGRNNPLLVSEGSLRAIRKAQLEKTLAEEADKRRARKKAREFKLNS
Ga0247723_10000724	F035280	GAGG	MEKKVGRYWFACGRKSGFGIGFNISKYGWDIDLGFWYIGMEF
Ga0247723_100007240	F058789	N/A	MGSFTSKAPCREADPWLFDQFNLDLAQPALNYCSRCIFWGECESLVQPKPSFYDGVVAGKVWRNGRIVAKLDASSPYRLIVGEEPDEDIDAMEFRGSELLGDRDELFFSREE
Ga0247723_100007242	F042324	AGG	MAWTDFFTEKLSGSKVVVDSDGKPFISKEIALKEYIEIELNIQENALPYNIYFRRFDAIGGELENRLFAQVGDRELALKSSLDIANKRLNSFEFVLDGE
Ga0247723_100007249	F043922	N/A	MAMSRRETQKAIQEAYSKWAEKVQFTSYTGADEADETILMQEIQTILQGNKPE
Ga0247723_100007254	F025725	N/A	MDGHNGLPKKEEVMPSVIDDTMQVLKSIGIESYRVSTPPGYAGIQVNLPNDSQAFFVWTKIDTTDYHFRLARFWANENPFSMWVSPNLIEALAKTRVLANQ
Ga0247723_100007259	F044450	N/A	MKAQILKSMIVDGRKLVAGDIVEVKGWRHAKALVNNRYIKLIEEDVVEEKVAEASKPKATKKTKEVAE
Ga0247723_100007260	F024770	AGGAG	MAVSHARVSVGTTATKLTSDYDGKDGQTINVQNPAGGADVFLGGEGVTTTSYGYLLKAETSFSVELQDDEKLYAVVASSTQTVNILRQGA
Ga0247723_100007261	F041730	AGG	MALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTENVIIIPVVIQKTFDATGSFSVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALGSVEAASYVSVDSYQALLTRYNGAESIRVLVVDADDKADDAETYASDASKAAGALENYNTNQLMMMG
Ga0247723_100007276	F008607	AGG	MDAIYNKVAEFMTDTVVFTPKASVDKYNKTTFGASNTNVTVTGRLIYDTTKSKDVQGIEVVDIGRFITKGPATSITVAHRMVVGADTFTINAIDNIADENGAHHTVIRFGR
Ga0247723_100007277	F019308	GGA	MAKSSFTLDLFGDKELVNALKAGQEDTPQAIAQAIWEEANVIFAKSQVLVPVDTGVLRGSGGVSAPQMGNAGYFVDIFYGGPAASYALYVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIRKGHRG
Ga0247723_100007279	F036203	GAG	MAETQQPMSSSDAGNVTGSSSKAQRVRGVSDVPVVNPKINQDDFFKDLDSLIGISREQGGCSIGRLVSKLDEPLRSKLNEIMRNEKVNSARLSEVMLAYGLQVSSSDVLRRHRRRLIGKDGCKCPNES
Ga0247723_10000729	F042308	AGGTGG	MGWDVTQVGSNITTKQFINWYLKSTYDGVYEPVKIFEGKNEYGQKAFYVALKKLEDNSVIATVFLTRRKNGSVAVKVLGESEGPCYYEAPESFINVLTPAKTLEGAWWRNRCLEKEVA
Ga0247723_100007291	F006261	GAGG	MATISSGYTTTVPIQITNPETWSFTAPQQPSIQITGIKVLQPLNLNIVESYGVFKPLGASKTVVVSQSIYGIDGTYEFVTTGETEWDALYPVLTYQGTLHVHDPLGRQKYIRLVERNWTESGNINSLVRRIKVTYYEVGAP
Ga0247723_100007294	F057363	AGGAG	MDKKTQAMFASYGRSFLAAVTTAFMITGGDILALDGDSLKAILAAGVSAVLPVAIRAANPKDPAFGKIADGITEAVVGKLTKKAPAKKSVAKKKAK