NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000055

Scaffold Ga0247723_1000055


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000055 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64365
Total Scaffold Genes131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)97 (74.05%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004840Metagenome / Metatranscriptome421Y
F010766Metagenome / Metatranscriptome299Y
F015600Metagenome / Metatranscriptome253Y
F021757Metagenome217Y
F030765Metagenome184Y
F040623Metagenome / Metatranscriptome161Y
F068817Metagenome124Y
F092053Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_1000055116F010766AGGMRIKIIKFVVKALGYEWGGDSLKAPIWTVKEKKKK
Ga0247723_100005539F021757AGGTGGMMTRKDYVATAEILGSYKDLIGDEFLFQDLVNDFGSMFEADNPRFNFETFREACEK
Ga0247723_100005544F004840AGGAGMDYEYLVTCQYDYEESPHWQQRYENEFGAWESFFRFTDWGMANEYSTVNIYTPTGKCYTKVFYRDGRVQVRA
Ga0247723_100005562F092053AGGAMKIKISKEHKEELQDQASQIVYFEASMSDEDDAVKGTYLRLVEIYKVAFEAGVNSK
Ga0247723_100005563F040623GGAGMKVKIAIEQIVDIDEAMSNDIGFELYGPPDMSTEDKVDYLIARFVEDIDTLVKYDEVIQQVSVEYIED
Ga0247723_100005568F015600GAGGMETTQLDPRLQLAVNMGVSGTDILHGELKNLMLEAETEYLEIEKEEREGGYSDAMLSMDRTRAEGRLDAYVEVYNLTYALSFAIADRIKRRG
Ga0247723_100005578F068817GAGVDIDEFMKDPWKRFNEMRNTPHECDYDYRIDSSGKMFFEICRLCLDTKGIVEMGE
Ga0247723_100005579F030765GGGGGVDTEQTFDQEFTVEDITKAIVEQAKAEVKSRYGNKKRHRQ
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