Scaffold Ga0247723_1000016

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000016
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 106810
• Total Scaffold Genes: 164
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 129 (78.66%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Associated Families: 16

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F004092	Metagenome / Metatranscriptome	453	Y
F004475	Metagenome / Metatranscriptome	436	Y
F007115	Metagenome / Metatranscriptome	357	Y
F009882	Metagenome / Metatranscriptome	311	Y
F011386	Metagenome / Metatranscriptome	291	Y
F018352	Metagenome / Metatranscriptome	235	Y
F020910	Metagenome / Metatranscriptome	221	Y
F029106	Metagenome	189	Y
F029439	Metagenome / Metatranscriptome	188	Y
F038549	Metagenome / Metatranscriptome	165	N
F067413	Metagenome / Metatranscriptome	125	N
F084151	Metagenome / Metatranscriptome	112	Y
F084246	Metagenome	112	Y
F093770	Metagenome / Metatranscriptome	106	Y
F097334	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_1000016123	F029106	AGGA	MNRKQKLLIAIGIAGAVGITYVISALKGLPEVFDWEDDINE
Ga0247723_1000016124	F000264	N/A	MAGKLYTSEIWLRKRFLMDKKSPEEIARECGASVETIYVYLAKFGLRKSKR
Ga0247723_1000016130	F004092	N/A	MAKEFTVYPGRFPCKKCGVEVTSLRYWGESGDATWMCENKHISKVNLLPPKRKKKDFINE
Ga0247723_1000016151	F038549	AGG	MTLNTYAQTGFPPTFLNAYINSELKVFGLIPDGPNPFQPFFPAQSPINIEDIYNDSVYIKNNPDAIVVMFDRLIRFRPNAFYRNKREQLVYFIYAPDLTKLFDATRVIIECLDREDSAAQDLNAWVATNDIADESGNTITPNVMFHNIKVYQADEARDIAELASARTLFLNKLVIEYDYHTIDTLGTSQRYT
Ga0247723_100001623	F097334	AGG	MPEVLVSNDDITVLGPPSVVEVLVDIGPTGTRGSQVFVGVGDPNIIEIGQTPLLNDLYINTSPGADYGYLYQYVSEPGGNTWIQILELNPTIYSQNHLTTYSSGTAQIVIPIADIVTVTGTPLTSGNFSVQYSISHDNPIASSMTIPTLVAPGDNLVINFSAVEHRNDVDSGPYGDWALLTGEVTTHIFISIVAADEES
Ga0247723_100001632	F011386	GAGG	MKVTITSMQGNTRNINLMSKQEVLQFIELYRSTLKKNQRVKVTCDLVGIDGYLQGVA
Ga0247723_100001633	F084151	AGGAG	MTITYAIWQGSSLLSVNNIATSAKEMDSVIDSLNASHTARVSKYHANVQKVEVKA
Ga0247723_100001634	F029439	AGG	MTTLNTITLEPSHAMASSNTGNPMVFRNTVGNYISRKAYLEMLATSQGVVSHRYLSPNESRWVMNNKKESI
Ga0247723_100001644	F093770	AGGA	MITLNHSINLVTEIDEHKMPSHLLSAFVNLSELEMEKLLRGAFVSALIGEGFLNKLNENNSWAIVKVGDN
Ga0247723_100001647	F018352	GGA	MGKFKESIIGILTCSYCYGNGWQFAGNDIDYDLWACDCNPYNVPADEIQAYHQLFKTKEN
Ga0247723_100001658	F009882	AGAAG	MGSELQDAVTIDKVTVPYNPHLLVTYKAIAGTYAAPEEPTYLTSKVTELEWDLHNGRTNRKALNNLQSTINTLEDQIVEWFDPNYSKEEVLVAICEHFGINPVKQIEVQGTVSFSGTISVPMSELADFDLSNVSIDVELNSYDYDADLNVDEVSVEDQY
Ga0247723_10000166	F067413	GGA	VATTNKDFVVKQGLKVATGVTFPDNTVQSTAALTVGSTFPSSPSNGQLFLYTVTERIYYYLNSEWNPIATYFDAQSEYNGNGMTYPTLFARLNGGAPNTTFTNALPSADGGSPSEQF
Ga0247723_100001664	F020910	GGAG	MQNWAKYTFVCDPFECDSLCEFTARDGYGFPNGVVSMYCPCGREMQYISVEEIESRFYEPVIKVTPPKVVKINSNPYN
Ga0247723_100001672	F007115	AGGA	MRVIKLGISKEEKVATTIGRLLSDYSLDLEAVGKYLAVAQPYLIYCRSLEVLEAAQYNKEVVEYNRLGYYSDRLF
Ga0247723_100001675	F084246	AGG	MTDKIEATSCYTYKVEMIVQILAEDEPAASEQLEKQGGYVTSRKVTLMDSVPLFNGKVVE
Ga0247723_100001676	F004475	GAGG	MTNWTEELSDEHKEQLWDFIVETVKEIREQIAVDIEGTSELWKAKGLNKSRRTTKAFQISAAIARGQNEI