Basic Information | |
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Taxon OID | 3300028024 Open in IMG/M |
Scaffold ID | Ga0255336_101417 Open in IMG/M |
Source Dataset Name | Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T3_179 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 17366 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (95.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Vancouver, British Columbia | |||||||
Coordinates | Lat. (o) | 49.2598372 | Long. (o) | -123.2459363 | Alt. (m) | Depth (m) | .35 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F013999 | Metagenome / Metatranscriptome | 266 | Y |
F016649 | Metagenome / Metatranscriptome | 245 | Y |
F018762 | Metagenome | 233 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0255336_10141712 | F013999 | AGGAG | MFRIISRERRIAVRQFARPFGPVVMALQLSLPASAQVAGDRVTSFLSNSLSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG |
Ga0255336_10141715 | F018762 | AGGAG | MRRLPKKMAFVGVLLGTVILLPAAAHAIFGTMPVIDLTTVGRIAEQIGVSRETLNTLGLYVQQYNRINEGVQEGVALSRGRQLRGLMNQPVGSQYPGFQQLQYDFRNVLVDPSTIRQDLENSYGITSGNFPISRMKRIDAADATATLGLFDASRMELVSEQEELDANDIEARAAAASPGGAAKLSAASNGALLRSQAYNQRLLARLMRLQALSIARENSVEKEQEQIRQDQASAVANMVGSMQLSYGLGDRLGR |
Ga0255336_1014177 | F016649 | GGAGG | MRDKYLLVSVVLSLAFLTTIACNSRPNVSGVWKGSIQASEQGGKNRWQGPAELTLNQNGDAITGSLAFTHPQGGRVQVPITSGVVSSDSVTFAGQSQFPLGGSLEITFRGKASGTSLTGTTDMTSRGLFGTVSNSGPLTLQKQ |
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