NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265346_100839

Scaffold Ga0265346_100839


Overview

Basic Information
Taxon OID3300028012 Open in IMG/M
Scaffold IDGa0265346_100839 Open in IMG/M
Source Dataset NamePlant litter microbial communities from Maridalen valley, Oslo, Norway - NLE4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)948
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9992Long. (o)10.7901Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017942Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0265346_1008392F017942GGAVVDSFYREVDSLYRVVDPLYRVVDSLYSAVDSFYIVVDYLYRVFDSLYIIVDSLHRVVDSLYRVVDSLHRVVNSIYIVVDYLYRVVDSLYRVVNSLYMVVDSLYRVVDSLYIVVDSLYRVVDSL

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