Scaffold Ga0265346_100601

Overview

Basic Information

• Taxon OID: 3300028012
• Scaffold ID: Ga0265346_100601
• Source Dataset Name: Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1086
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Actiniaria → Edwardsiidae → Nematostella → Nematostella vectensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9992
  • Long. (^o): 10.7901

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017942	Metagenome / Metatranscriptome	237	Y
F018655	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265346_1006011	F018655	N/A	LYRVVDSIYIVVDYLYWVVDFLYRVLDFLYRVVDSLYRVMDSLYRVVDSLYRVVDSLYRVVNSLYRVVDSLYRVVNSLYIVVDYLYRVFDSLYRVVDSFYRVVDSF
Ga0265346_1006012	F017942	GGA	VVDSVYIVLNSFYRVVDSLFRVVDSQYRVVDSIYIVVDYLYRVVDSLYRVVDSLYRVVDSLYRVVDSLYRVVDYLYIVVDYLYRVFDSLYRIVDSLHRVVDSFYSLVDTLYRVMNSIYIVVDYLYRVVDSLHRVLDSLYIVMDGLPL
Ga0265346_1006013	F018655	GAGG	VDSLYRAVNSVYKVVDSPYRVVDSIYRVVDSLYRIVDSLYRVVDSISMVVDYLYRVVNSLYRVVDSLHRVVDSFYREVDSLYKVVDSLYR