Scaffold Ga0228674_1042581

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228674_1042581

Scaffold Ga0228674_1042581

Overview

Basic Information
Taxon OID	3300028008 Open in IMG/M
Scaffold ID	Ga0228674_1042581 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 1D_r
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1759
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048584	Metagenome	148	N
F055202	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228674_10425813	F055202	AGGAGG	MTRRQSKAIRQQVKAALIQIGLGACAGFIIGAVLFMNL
Ga0228674_10425814	F048584	GGAG	MQDYDLTQYCNDIAEEIARDASDIEQATDWAHESADGSEYVIYYAKAHAVCQNCNIDQGEDFFSECYGGEHGKSYDEIACIMAYGEINARICARLWEMFEEREEEAA

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