Scaffold Ga0209168_10000006

Overview

Basic Information

• Taxon OID: 3300027986
• Scaffold ID: Ga0209168_10000006
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 244093
• Total Scaffold Genes: 235
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 176 (74.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000474	Metagenome / Metatranscriptome	1097	Y
F002746	Metagenome / Metatranscriptome	533	Y
F050333	Metagenome	145	Y
F059139	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209168_10000006204	F002746	GGAG	VRIKDLGSRPAPKSIREMFSRVVRGRGPSIPVQRRQIPYWQERGWTRQGNIYTGSYQSPYGAFWGQIEQHRGGQIDFLLYNPSEQIQRHSHWVCFQHRGNDWYLVHMAKAPRDVSSGIIIVERLITEAYEF
Ga0209168_10000006205	F050333	AGGAG	MKKLSVVVAGTGQIRDVEIQPGTSAGDILHQLNLSDYLLSKGPNEPFFAAAESVYDKVKDGEKIFASTKAEVGVLEPCA
Ga0209168_10000006207	F059139	AGAAG	VEVVLEQADKLKAEIAELEEEIKAKRRQLQKFEEARKLFEAV
Ga0209168_1000000672	F000474	AGGAGG	MSDRVDFEIVCPNDHEQTVTFSREEFEAELKSGALVFHCNTCDTNWPPSHEDIAKIRKGFPKNSK