Scaffold Ga0209298_10046550

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10046550
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2032
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F006135	Metagenome / Metatranscriptome	380	N
F016253	Metagenome / Metatranscriptome	248	Y
F016961	Metagenome / Metatranscriptome	243	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100465501	F016961	N/A	GTWMHDPMNTVITIVCMAVLLPFCVIAGIYVGHSLTIKSQQTKTNEQNNRSL
Ga0209298_100465503	F016253	GGAGG	MSDKIKSFIDCGTGVYSISKKEAGEIHKAAKKVKNHEVSYWTRNRKNKESK
Ga0209298_100465506	F001259	GGA	MNRIGPDTVAFIYVHKTNGTIRVESLDTARRVDNSPEWKHVATINPHVVLESILRATIKDRNKIIKHLLT
Ga0209298_100465507	F006135	N/A	MSVRIKIENQTEVPVLVALFEQPKCNDHPSRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGVAEVVAPLELGFKLWHEGDIDWANVKAMSSDDLNATFGSTYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIYRPKTVAYNGVQSTPMKSE