Scaffold Ga0209298_10036894

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10036894
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2331
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F009331	Metagenome / Metatranscriptome	319	Y
F026830	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100368943	F003784	GGA	MYDNDRERVGHNATDFAAYGLSHLAAGQSNTTHTHTPTTNPLIDHAAVTGYRAVGVSTEDLTSFIESFASLRAQRVKGVGHSQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDRVLPDCD
Ga0209298_100368946	F009331	GAGG	MICQNCHKAGEENGLAHYKRSAHWHDKCDYKGCVCQHKTGPGYVKRDGTKVPLMQTQSP
Ga0209298_100368947	F026830	N/A	DYKMPVPGGEITTTEILVPEVVPVEEVEDDLPELS