Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10011821 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10011821 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4606
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4606

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (58.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012433	Metagenome / Metatranscriptome	280	N
F014487	Metagenome / Metatranscriptome	262	Y
F045612	Metagenome	152	Y
F081046	Metagenome	114	N
F086811	Metagenome	110	N
F088509	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100118212	F081046	N/A	MTAKTIKYSQRLGDIIRCLPACKYLADQGHEVFFDCLPQYHGIFEMVSYVKAGNKGDVIDLEIWPNKYQEYRGSNKTWTEFVYSHPAINKADSTNIIFDKLDDAPAKGLPAEYNMVAPFGISQGEKQDPLKIIVEARTKAGANNFIVLAPEGFKISGLETYTAPSVSEMARAIRGATEFYAINSAPMTIAAGVRKEKKVIFYPQKIEPFDKDNLFIWDTVEPN
Ga0209298_100118214	F088509	N/A	MTSIERQLEESLATALAGVSGVNIYKSDTKGTRLLPNIVIQCSIGSEEIIPYSGVFRCPATITYATRADTTTRTAFDAKFQDILQVMYQSPNLAGVLTTATLKVFLANVVSESPDIKSENRTWSKNLSLDISCTSI
Ga0209298_100118215	F086811	N/A	MITPQFKIEDALASLLTPISGLNVLVSNKTGVRLFPYATIKASLGKQYISPYSGVFEVAVEINYSDSAARTTQAVFDSNYYEVFAALYSNNNTLVTKVQDNVIDLKIFMARITSQSPTIRTDKRAWQRGLTLSFIVTPDATADGLRDYDFSEALNSFYIGTI
Ga0209298_100118217	F014487	AGG	MPVLLLAILLCSCSPKRDNNVLPRYSDMSAAEDAGKSR
Ga0209298_100118218	F045612	AGGA	MKYQYTYEDFMHSLKWLEAEGYIEQFIDGDGNVCVRICEGAENYEL
Ga0209298_100118219	F012433	GAG	MSADQVAELQERLSTVREAIARIEERQQNIISVLERHTSELAQWSNKINTKVDVLERDAHTIKTKLWLVALVSGAVFSTIWELIKARVLYK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10011821

Overview

Ecosystem & Geography

Associated Families

Sequences