Scaffold Ga0209298_10007915

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10007915
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5837
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F012433	Metagenome / Metatranscriptome	280	N
F019102	Metagenome	231	Y
F026543	Metagenome	197	N
F035218	Metagenome / Metatranscriptome	172	Y
F045612	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000791510	F006138	GAGG	MAAVTIGTQGLSFGLVNEVGIGLVQSFSEARNVEKNEIRSNSGDIVAVGYYNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS
Ga0209298_1000791511	F026543	N/A	MTEAFWGTTNIKVASAVASFGAKPRQIDPVTRTIKEDGSVQATFWFEAGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATLEQRRAILKHL
Ga0209298_1000791512	F019102	N/A	MSISLEEELNSAFISPQKEFMGEKLAPYTEGSRLLLLQVRDDEDSSIYFIWSFIYVHILLAKNKKDAIKLAWNKNLFREKIMEYIEGKTEADREVATTIVSNILDEAQKGKVDVIPAPHQPDLGNA
Ga0209298_100079153	F005584	GGTGG	MAGTISTSYFATDLSYMIGDLYQSVTGLGSSAVSASVTDLVTASELEIGGEVFRITQSVVVLASSVSAPTIGSLCSVSGVERMIGGFSQSTDGLSYTIELAEITT
Ga0209298_100079155	F009142	N/A	MNNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQADFDAEYCSIFEAFYSETPPLFTKIQNNILDTKVYTARITGQTPTIRTAKRAWQRGLKISLICTPSEKEDGLRSLSFYQKQNSMYVAVI
Ga0209298_100079157	F035218	AGGAG	MPLTKNPSDIDSFIFASGRMKMYRAGLAGSYTKVTGTGGVATLANTGGFHMNLNAGSSASGTSKIGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYMASTNSVIRMVLGGTGNATDAPLAGVNGLTIKGFGAEFALQSDVIQARLIGYNASYLTPTSYTTLTNGFGTSASDNRFFGVVIESDGAGNINLYGADSSINPNINIGQVPLLTLTGGPTNDTSTNRFGPEIHCSNSSSSPTASPSAILQSTHWLLDVQ
Ga0209298_100079158	F045612	AGGA	MKYQYTYEDFMHSLKWLEAEGYIEQFIDEDGNVCVRICEGAENCEL
Ga0209298_100079159	F012433	GGAG	MSADQVAELQERLSTVREAIARIEERQQNIISVLERHTSELAQWSGKINSKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVLPR