Scaffold Ga0209298_10001910

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10001910
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13256
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F026867	Metagenome	196	Y
F031026	Metagenome	183	N
F035218	Metagenome / Metatranscriptome	172	Y
F043284	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000191010	F005502	AGG	MRALCNVVLTFLAFFGFPATQASNVMIDMRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSRIRVIGAKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEVTK
Ga0209298_1000191011	F016963	GGAGG	VIELLPEQSTHEQLLNRVRSLARELAEAKAALAAAEGRENDLIDRIRAGL
Ga0209298_100019102	F043284	AGG	MKLTPVINKLNVTRDKALELIGKTIGLAAEAGEIINQARTNGDNIVDLCKEAGITEEVGKRYEKVAAAQPKLTNGEADPSLMRQTYLRIGIMPDPITVSEPSEPKHFLFPIMKARQWLASRGLKFISQDKELRKQFLAEAEPIVNAYKEMTQ
Ga0209298_1000191020	F026867	N/A	MSLGRLNDIAMKLRQENQALSLRQLGAAYGFGYVRIKQMQALPGFPMLAGKVIPSDFDRWRLMQTGLSSQHRGDRLRSAAGTAHALTSRSGSRVAWRQIESTLKAAIESHGLPEGSGSSD
Ga0209298_1000191027	F031026	GGA	MPGGRIALLLIFSLALASCATTSQTQDGPPPSQDSISYFIYAWDKAERTNKPCPQAYRDLYAQALKALSDSLAETERERARNQ
Ga0209298_1000191030	F006891	AGG	MSTDQVAELAERLSLVRESIARIETRQGVIMDMLERSQASLGEYHGRLTSMERDAHTIKTRLWLVALVSGAVVSTAWELIKRRLGF
Ga0209298_1000191032	F035218	N/A	GTGGVASIGNTGGFNINLNAGSAANGTSKAGYQDPTAAFMTASANKIDYSKRIRFSIGGMMYMGSTNSVIRMVFGGTGNATDAPLAGVDGLTIKGFGVEFALQSSVIQARLIGYNASYLTPTSYTTLTNGFGTTTSDNRFFGVVIESDGSGNINLYGAESSLNPNINIGQVPLLTLAGGPTNDTSTNRFGPEIHCSNSSSLPTASPSAILQSTHWLLDVQ
Ga0209298_100019106	F007747	GGAGG	MKDLGKITFGKARPAPKQLLVDVTYDAKTAKALHAFGLKQLKKDEKAVIQYVIEKALEGFSKK