Scaffold Ga0209298_10001706

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10001706
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14166
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (83.72%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F008496	Metagenome / Metatranscriptome	332	Y
F016662	Metagenome / Metatranscriptome	245	Y
F027180	Metagenome / Metatranscriptome	195	Y
F043404	Metagenome	156	Y
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000170612	F007525	GGAG	MTSLTGVTVTYTEVIPTSKQMAEFYVWQEGYESYATIRYEDRVVEVERGGEMHLTLPNLVNGELSDEGATIVRYSDDLEAAGINDDIQFMQYLKTISNSGFQVYRMNPWWEVFSHNEDMGEVYDTFYDAVNGGIDYILDDRNW
Ga0209298_1000170616	F093864	GGAG	MYQYNVEFVLERMVIITSVEIDEPDTPDDAIIQVARNNILSYYKIDPEVLHLQDVIVHEV
Ga0209298_1000170618	F016662	GGAG	MYLVAVTEVIYSEEYIIKEMLATGDYGVHGHPISHEAIVEFVKDREWQIEHHLFLDRYKDVPVHIAIKDEDGTDVFFAKNKIEVK
Ga0209298_1000170619	F043404	AGG	MYQPTKRTKMIDTDNPLLQTLADDFVDLHKVGGIELEQWETAYNFVKHFYHTEEMVQIIIREKR
Ga0209298_1000170621	F008496	AGGAG	VDYPIPATVTQMPESNATFVKEMVEAGELKPLYDPKATIVVRKGYYYGTPSDSKFDLENADDISRTYWRLDALQESNSRNSKAVDKLKDYLVENYDEIGEEHATEIANIFSIDLSKEVEVEFTVTIKATISMPVNEEVSDLSIYDFDITLESNESKYEVQDFDADIDSIDERY
Ga0209298_1000170629	F027180	N/A	MKLFKKKEVEDTFTKLDRLMSEMATSDTYIEYLREREGM