Scaffold Ga0209298_10001557

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10001557
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14823
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F005531	Metagenome / Metatranscriptome	397	Y
F006744	Metagenome / Metatranscriptome	365	Y
F010085	Metagenome / Metatranscriptome	308	Y
F017995	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000155719	F010085	AGTAGG	MKIQYVSKYIALSEEGLVPRLECPMDQGSLYCNLNLKDEIYLYCLSCNYKNFIGTSYYDKIVSIVKGVKID
Ga0209298_100015572	F017995	GGA	MSKMKEYIEIIAAECDECGGAGFLFFGDERNYDVEPCACVDEVADELTVDWVNE
Ga0209298_100015573	F006744	AGG	MNLDEFKKAVIAQRELSKAEALSVLSATITTQTNERENLK
Ga0209298_100015576	F001562	AGGAG	MKSELERDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAELEDET
Ga0209298_100015579	F005531	AGAAG	MTITYSLWQGSSLLSVDNKATSADELLKVMEELNKLGKGFTYNVRGVEVK