Scaffold Ga0209298_10000459

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000459
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27025
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (60.42%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F010463	Metagenome	303	N
F012113	Metagenome / Metatranscriptome	283	Y
F019102	Metagenome	231	Y
F024265	Metagenome	206	N
F026543	Metagenome	197	N
F033350	Metagenome	177	N
F035669	Metagenome	171	Y
F093492	Metagenome	106	Y
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100004591	F100669	AGGGGG	MTKGISDLRKFLHKAQVRLTQAGSLIIGYLRKIGSIVRSINKLGDSYDAKCTQNRFR
Ga0209298_1000045911	F010463	AGAAG	VNYPQDMVLAATIHRVKMCEDKLREFEQMVTTLTSTMAQNRAELASKGLEKFVIGVTTPLDIPKELVPTYGKAGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHPTTILFAKSRNFVVRKAKGGSR
Ga0209298_1000045916	F033350	GGAG	MSIDVDVPKLKWSMIQWKTIEEKPKNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0209298_100004592	F007164	AGGA	MSEKQIGMELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPSPSGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPTQWTPAQRSQFVEEARPIVEAYKEAGGEL
Ga0209298_1000045920	F005702	AGGA	VIFGLIIFVGLVIVRGLYLIAQHIDQQNYERRRFYLSVAADLDRLDKIVADGNQPKQPELTLPSKNWVGRN
Ga0209298_1000045921	F005846	N/A	MTSFPLPARPQASAVPASHIEFKKYTAIEGKANGWRGLFHQKTGIGYNRHGKIASNHNLMVERLANAGIKAPYIDCEIMGMRTKTGKGTIIVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVQLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKAMDDGKYPFITNPNYCSPAWQKQRIRW
Ga0209298_1000045927	F012113	N/A	MNQLFSFVQSQDIFAWVGALVALLSAVIAIASLIPGDEPEATLTKIVSFLSKFSKK
Ga0209298_1000045931	F035669	N/A	MRENQINELQGTSILTKSFFNKLIRRIECTKPLAGSGITISEEENGFKISGGAGGGDVTGYSAITLNVCSNGEPAQIVVLGTAVTQ
Ga0209298_1000045932	F093492	N/A	MGFSIIGSSIDSKVLQRQNFSKEPNGLETITESYAIKTSNRDTIVPEKGVVHFSFSSSTKKYPRMIVESVNTEEQDGGITQMLVTFVGLTTESGLPPAIVRLIPTAGAGIFGPPLTIEAEFVTDVTETMFIQGNINATAEIKLGNVSFGTVNQMPPFINGTQMPLNPRPPGFINGGYFFGQYFGYCVESFSCERRGLFLVARTTYTEKSGFFQ
Ga0209298_1000045935	F019102	N/A	MSISLEEELNSAFISPEKEFMGDKLAPYTEGSRLLLLQVRDDEDSSIYFIWSFIYVHILLAKNKKDAIKLAWNKSLFREKIMEYIEGKTEADREIATTVVSNILDEAQKGKVDVIPAPHQPDLGNA
Ga0209298_1000045936	F026543	N/A	MTEAFWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEARAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL
Ga0209298_1000045937	F006138	GAGG	MAAVTIGTQGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNSGDIVAVGYYNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS
Ga0209298_1000045941	F009142	N/A	MNNSVQINVEDAIAGLLTSISGLNVYKTNRVGAKLFPFATISASVGGQVLGNYTGVYEVSVTMDYSDTAAKISQANFDAKYCSIFESFYSETPPLFTKIQSKIFDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRFLDFHEKRNSMYVAVI
Ga0209298_1000045944	F008741	GAG	MSVKTIKYSQRLGDVLRCLPACKYLADQGHEVFFDCFAQYQGVFEMTSYVKAGHRQGDVIDLEIWPNQYEAYRKSRRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPETYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFFVLCPADIKIQGLDTYTAPSVEQMAKAIRGATNFWAINSTPIILASATRRDKQTGFFPQKNEWETDNIFSFEGMITMD
Ga0209298_100004596	F024265	N/A	MNESYVTAEAKANGILADRYPGKELEKLYAKTRNQATIDMLRDAVLTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVNRED