Scaffold Ga0209298_10000298

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000298
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33472
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (79.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010236	Metagenome / Metatranscriptome	306	Y
F022817	Metagenome / Metatranscriptome	212	Y
F050982	Metagenome	144	Y
F078654	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000029815	F022817	AGAAG	MSKSSKHYLPNGKEYMGATHKMDGQIHTGAKHTASSKVLKHTKPKKK
Ga0209298_1000029817	F010236	AGGA	MKKAQDIVGRIVAVFLSSALAIVGGSAVIAPELEIWKSAVLAGFAACATVVQKLAQASLDGKLTMEEINSAFGAKSEK
Ga0209298_1000029820	F078654	GGA	MTDYAVVLTRRYQGKEWTTVGGEYTDILWHSEGTKPSKSVLDGLWASVQQEIADEPAAKLAAKQAVLDKLGLTADEVTALLG
Ga0209298_1000029824	F050982	GAGG	MSQYFAQVTNGVVTDVAVVTAEFMAANPDRYEGTWHETFFDTAGKTYAGIGYTWNGVDFVAPIVEEPV