Scaffold Ga0209298_10000041

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000041
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72493
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (75.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F003965	Metagenome / Metatranscriptome	459	Y
F021109	Metagenome	220	Y
F024319	Metagenome / Metatranscriptome	206	Y
F044495	Metagenome / Metatranscriptome	154	Y
F051126	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100000415	F044495	AGGA	MNKFEKALVALAVAGTVGFVFAFAALKGIPEAFDWEDDDEESMWGHDLGGEA
Ga0209298_1000004174	F021109	AGG	MDTLNRIKAEQDLARHEAHEKAMLKSPWIRESVEAYRSADEAQIATIEAIRKKWYGF
Ga0209298_1000004175	F003965	AGGTGG	MTTLTVCKEHNPMLSAISSVGDDQFTFCQDCENNIERWYDDTDPERLPMWSDWKVSK
Ga0209298_1000004178	F024319	AGG	MTNRMWESRNDFQNESDAKRLGYVACSAGCGRVTAWSLCVMCGGNYATHNLVGK
Ga0209298_1000004182	F051126	AGGCGG	MSALTYTIDNLLVGKHYRSRSRHDEGTILHAEKREGIWYGENLDAYVVEVSSTCGIRNFWATVTVRTGE
Ga0209298_1000004187	F002515	N/A	MKKNAEELRRLMELRRSNAASAVPNKKKYDRKKCQSLMLELRKERGPHD