Scaffold Ga0209079_10028168

Overview

Basic Information

• Taxon OID: 3300027972
• Scaffold ID: Ga0209079_10028168
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1875
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024535	Metagenome	205	Y
F033362	Metagenome	177	Y
F037637	Metagenome	167	Y
F105026	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209079_100281681	F033362	N/A	FIEVIKKQGAVGVLALWLAYTHFEVQDVKDRLYNCLDKNEYYNRKPIEEKQPILPSVKTDTVAVLENKNRKLAKK
Ga0209079_100281683	F024535	GGA	MAKKKINIDTDNLDVNLEKDGTNVKIDIDTKNLDIHVVRDEINKEFNLDGKNIDIHVKKTPEGVEVKVDAKGVLWKAIAKRIVKFILRRFKVGK
Ga0209079_100281686	F105026	N/A	MKSKIKNAVNTYFPHRPNVKYLSRKWKTKICPEDKGGSFNEKLYNDYLDAILNFTK
Ga0209079_100281687	F037637	N/A	MNGHGTKKRTKRVSVTFEWTVQTDLRLILDELKDLIGSGIEMYHNQKKSVQIEDKWHEVEFKQEYLDVIHDSVERE