NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1020229

Scaffold Ga0209401_1020229


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1020229 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3408
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035668Metagenome / Metatranscriptome171Y
F077016Metagenome117Y
F102815Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209401_10202293F102815GAGMTTEELFLDAVNAYKAWVACGKDFLNHAHLFDVWDDAVTAYGQAVFLERNRAVHQVLQGLDLVQ
Ga0209401_10202295F077016AGGAVPTNNAEQVREFYRKQGEERERVRLIELLKEQNVIRNCGATGKLVFVNCNTLEVLYLKEISDE
Ga0209401_10202298F035668AGGMTCNNCQDGCKCARVNSVNIFSRDYKAGQAHGQRDEHTRTSDALIELERSGIITNAQMQAILDLVLEKLTDAMDIP

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